Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43560 273 / 1e-93 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G45680 78 / 2e-17 ATFKBP13 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1) AT4G39710 75 / 3e-16 PnsL4, FKBP16-2 Photosynthetic NDH subcomplex L 4, FK506-binding protein 16-2 (.1.2) AT3G25230 68 / 4e-13 ROF1, ATFKBP62 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) AT5G48580 65 / 6e-13 FKBP15-2 FK506- and rapamycin-binding protein 15 kD-2 (.1) AT3G25220 63 / 2e-12 FKBP15-1 FK506-binding protein 15 kD-1 (.1) AT3G60370 64 / 3e-12 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G48570 65 / 4e-12 ROF2, ATFKBP65 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G10060 63 / 9e-12 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G05420 60 / 2e-11 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027115 [exp] 422 / 3e-151 AT2G43560 276 / 5e-94 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10006949 [exp] 83 / 3e-19 AT5G45680 244 / 2e-82 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1) Lus10016811 [exp] 77 / 8e-17 AT4G39710 271 / 5e-93 Photosynthetic NDH subcomplex L 4, FK506-binding protein 16-2 (.1.2) Lus10022507 [exp] 76 / 9e-17 AT4G39710 270 / 8e-93 Photosynthetic NDH subcomplex L 4, FK506-binding protein 16-2 (.1.2) Lus10024735 [exp] 76 / 9e-17 AT5G45680 194 / 1e-63 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1) Lus10042897 [exp] 75 / 3e-16 AT3G60370 312 / 8e-109 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10028194 [exp] 74 / 2e-15 AT3G60370 305 / 2e-104 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10003171 [exp] 75 / 3e-15 AT3G25230 871 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10035560 [exp] 72 / 4e-15 AT3G10060 296 / 2e-102 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G134600 [exp] 283 / 5e-97 AT2G43560 286 / 2e-98 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.017G017500 [exp] 282 / 1e-96 AT2G43560 281 / 3e-96 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.005G079700 [exp] 78 / 3e-17 AT4G39710 243 / 1e-81 Photosynthetic NDH subcomplex L 4, FK506-binding protein 16-2 (.1.2) Potri.014G149400 [exp] 79 / 9e-17 AT5G48570 741 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.001G075500 [exp] 76 / 1e-16 AT5G45680 253 / 7e-86 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1) Potri.002G248300 [exp] 72 / 2e-14 AT3G25230 857 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Potri.014G045600 [exp] 69 / 5e-14 AT3G60370 302 / 3e-104 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.012G129200 [exp] 70 / 1e-13 AT4G25340 344 / 1e-113 FK506 BINDING PROTEIN 53 (.1.2) Potri.002G248200 [exp] 64 / 9e-13 AT5G48580 228 / 1e-77 FK506- and rapamycin-binding protein 15 kD-2 (.1) Potri.006G033400 [exp] 67 / 1e-12 AT5G48570 596 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0487 [flax] [poplar] FKBP PF00254 [flax] [poplar] FKBP_C FKBP-type peptidyl-prolyl cis-trans isomerase
Representative CDS sequence Show only first row Show all	>Lus10008359 pacid=23178463 polypeptide=Lus10008359 locus=Lus10008359.g ID=Lus10008359.BGIv1.0 annot-version=v1.0 ATGGCGGCAGTATCGCCTTCGTCTATCCCACGAACCCTAGGTACTCATCCTCATCGTCATGCTTCTTCCCCTACGGTTCCGTTATTCGCCGGCGGCCGAG TGATTCTACGTTGTTGCTCCACGTCGGAGCTCGGAGGCTGCGGCAGACGCGATCCTTGGACGAGAACCAATGCTCTGGCGACGCGTAGGGATGTGATCGG GGCGATTATCTTGGGAGCTTCAAGCATTGTGATCGGGCCGTATGATGATGCTAGAGGAGCTGGATTGCCTCCGGAGGACAAGCCCAAGCTCTGCGACGCA ACTTGCGAGAAGGACCTTGAAAACGTGCCCATGGTGAATACAGAATCCGGGTTGCAATACAAGGATATTAAAGTTGGTGAAGGGCCTTCTCCTCCTGTTG GTTTCCAGGTTGCTGCTAATTCTGTTGCAATGGTTCCATCAGGACAGATCTTCGATAGCTCTTTGGAGAAAGGGCTGCCATATATTTTCCGTGTCGGCTC TGGACAGGTGATCAAGGGGCTTGATGAAGGGATCCTCACAATGAAAGTTGGAGGGAAGCGGCGGCTCTACATTCCTGGACAGTTGGCATTTCCGAAAGGT CTGAATTCAGCTCCAGGAAGGCCAAGGGTGGCTCCCAATAGCCCTGTGGTTTTCGACGTCAGTCTTGAATACATACCAGGCCTTGAGTTGGATCTAGAGT AA
AA sequence Show only first row Show all	>Lus10008359 pacid=23178463 polypeptide=Lus10008359 locus=Lus10008359.g ID=Lus10008359.BGIv1.0 annot-version=v1.0 MAAVSPSSIPRTLGTHPHRHASSPTVPLFAGGRVILRCCSTSELGGCGRRDPWTRTNALATRRDVIGAIILGASSIVIGPYDDARGAGLPPEDKPKLCDA TCEKDLENVPMVNTESGLQYKDIKVGEGPSPPVGFQVAANSVAMVPSGQIFDSSLEKGLPYIFRVGSGQVIKGLDEGILTMKVGGKRRLYIPGQLAFPKG LNSAPGRPRVAPNSPVVFDVSLEYIPGLELDLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43560			FKBP-like peptidyl-prolyl cis-...		Lus10008359 [exp]	0	1
AT5G59250			Major facilitator superfamily ...		Lus10016505 [exp]	2.8	0.8796
AT4G28030			Acyl-CoA N-acyltransferases (N...		Lus10015504 [exp]	5.3	0.8736
AT3G09050			unknown protein		Lus10027783 [exp]	10.7	0.8683
AT5G56760		SAT-52, AtSerat...	SERINE ACETYLTRANSFERASE 52, s...		Lus10032686 [exp]	11.6	0.8489
AT1G14150		PnsL2, PQL2, PQ...	PsbQ-like 1, Photosynthetic ND...		Lus10037159 [exp]	21.3	0.8617
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Lus10001416 [exp]	22.2	0.8246
AT2G12400			unknown protein		Lus10008813 [exp]	30.0	0.8458
					Lus10009395 [exp]	30.6	0.7578
AT1G08500		AtENODL18	early nodulin-like protein 18 ...		Lus10036067 [exp]	32.8	0.8251
AT4G00030			Plastid-lipid associated prote...		Lus10020912 [exp]	33.1	0.8418

Compare expression of checked genes

Lus10008359 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.