Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55690 629 / 0 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT5G56160 491 / 3e-166 Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G39170 424 / 5e-140 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT2G21520 423 / 4e-139 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT3G24840 421 / 5e-139 Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G34580 394 / 6e-129 SRH1, COW1 SHORT ROOT HAIR 1, CAN OF WORMS1, Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G39180 390 / 1e-127 ATSEC14, SEC14 ARABIDOPSIS THALIANA SECRETION 14, Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT2G21540 386 / 5e-126 ATSFH3 SEC14-like 3 (.1.2.3) AT4G36490 372 / 2e-120 ATSFH12 SEC14-like 12 (.1) AT1G75370 371 / 2e-119 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022790 [exp] 429 / 4e-142 AT3G24840 650 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10042302 [exp] 392 / 7e-127 AT2G21520 910 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10023546 [exp] 390 / 9e-127 AT2G21520 924 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10026356 [exp] 387 / 2e-124 AT2G21520 925 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10040431 [exp] 375 / 2e-120 AT2G21520 921 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10011853 [exp] 370 / 1e-119 AT3G24840 576 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10038176 [exp] 360 / 2e-115 AT3G24840 551 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10023547 [exp] 357 / 2e-114 AT2G21540 664 / 0.0 SEC14-like 3 (.1.2.3) Lus10040432 [exp] 357 / 9e-114 AT2G21540 679 / 0.0 SEC14-like 3 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G168300 [exp] 679 / 0 AT1G55690 710 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.001G471300 [exp] 662 / 0 AT1G55690 714 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.002G243000 [exp] 438 / 7e-145 AT3G24840 638 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.009G119500 [exp] 413 / 2e-135 AT2G21520 975 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.004G157700 [exp] 412 / 5e-135 AT2G21520 908 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.002G032600 [exp] 390 / 1e-126 AT2G21520 731 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.005G230500 [exp] 390 / 3e-126 AT2G21520 756 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.009G119400 [exp] 384 / 2e-124 AT2G21540 729 / 0.0 SEC14-like 3 (.1.2.3) Potri.005G119700 [exp] 380 / 2e-123 AT4G36490 726 / 0.0 SEC14-like 12 (.1) Potri.007G020300 [exp] 379 / 5e-123 AT4G36490 731 / 0.0 SEC14-like 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF03765 [flax] [poplar] CRAL_TRIO_N CRAL/TRIO, N-terminal domain CL0512 [flax] [poplar] CRAL_TRIO PF00650 [flax] [poplar] CRAL_TRIO CRAL/TRIO domain
Representative CDS sequence Show only first row Show all	>Lus10008360 pacid=23178488 polypeptide=Lus10008360 locus=Lus10008360.g ID=Lus10008360.BGIv1.0 annot-version=v1.0 ATGTCTGTAGCAGAAGAGTTTATCGTTGATGGCGATGAGCTCAGGGAGCGAAGATCTGATTTTGACAACTCTGAGGATGAGAGGAGGCGATCAAGAATTG GTAATTTCAGGAAGAAGGCCATGAATGCTTCAACCAAATTCACTCACTCTCTTAAAAAGAGAGGGAAGAAGAAGATTGACTACAGAGTTTCTTCAGTTCC AATTGAAGATGTGAGGGATGAAGAGGAAGAGAGAGTTGTTTCGCAATTTCGTCAAAGGCTCCTTGAGAGAGATCTTTTGCCTCCAATGCACGATGACTAT CACACTATGTTAAGATTCTTGAAAGCTAGAGACTTTAACATCGAAAAGACGATCCAGATGTGGGAAGAGATGCTTAACTGGAGGATAGAGTATGGGACTG ACACCATATTAGAGGATTTTGAGTTTGAAGAGCTGGAAGAAGTCCTGCAGTATTACCCACAAGGGTACCATGGAGTTGATAGAGAAGGCCGTCCTGTTTA CATTGAGAGACTTGGGAAAGCTCATCCAACTAAGCTTATGCGAATCACTACCATTGATCGGTATCTCAAGTACCACGTCCAAGAATTTGAGCGGGCTTTA CGAGAGAAATTCCCCGCTTGTTCAATTTCTGCAAAGAGAAAAATATGGGCAACTACCACAATACTGGATGTCAATGGCTTGGGCATGAAGAATTTCTCTC GGACTGCTGCGAATCTCTTGGCTGCTATTACCAAGATAGATAACAGTTACTATCCAGAGACCCTGCATCGGATGTACATAGTGAATGCTGGTCCCGGGTT CAAAAAAATGCTTTGGCCTGCAGCACAAAAATTTCTCGACGCAAAGACTACTTCAAAGATACATGTTCTTGAGCCCAAATCTTTGCACAAGCTACTGGAA GTCATTGATCCAAGCCAACTGCCAGACTTCTTGGGTGGCTCTTGTACCTGTTCAGCTGAAGGAGGTTGCCTCAAATCCAACAAAGGCCCATGGAATGATC CTGAAGTGATGAAGGTTGCAGAATCAGATTTGGACTGCATCGAGCTCCCCCTTACTGAAAGCAGTAGTTCGGCTCCAGTTCATGATGAAGCCAGGGTATC TGATGCAAATGGATACTACAGCTGTGATGATAGTTCTACTTTGCATGAAAAGGGGCACTGCAAAGATCGTCTACTTACGACATGCCCTTCTGAAGCAGCA CCATATTTACTAGGGCAACACTTTTGCCGGTTCAACATTGCGGAAGAGAAGTTGGGGAAAGGGAAAGTGATATGTGCTGCAAGAGCACTAACATTGTTCG TGGCGAAACTAATTGCATTGCTCCACCAATTACCCTTCAAACATTGGAGAAGGCAGAACAAAAACATTCATCCATCGAGTTCGGTAGAGGGTAATGTTCG TGGTAGTGATTCAAAGGCAGAAGGCAAAGCAAGTAAACCAAAGGAAGAAGACAAGATCGCCCCTTGTATGGAGCGGCTGCAGAGACTAGAACGGCTAGTT GTGGAACTCAGCAACAAGCCTCCTCAGATTCCAAAGGAAAAAGAACAAGTCCTTGTTGAATCTCTGGATAGGATAAAATCCGTGGAGTTTGACCTCGAGA AAACGAAGAGAGTCCTTCATTCTGCAGTAGTCAAACAACTGGAGATTGCGCATCTGTTGGAAGGTCTGCGGGAGGAGTCTCAATTTCGATGGAGTTTCTT TGAGATATACAAAAATGTCAAATTTGTAACGCTGTCGCTTGTCAATGGCACCTTGATATCACCGGCGGAGGAAGATGACGAATTGGTGTTGCATTCAGCA AGGAAGAGGCGCCTGACCACACCAAGCAGCCGCCCAACATCAAACACTTTGGCATTGGAGACGGATTTTTCGTTAAAATGTGCGCAAAAAGCTATTCTGA AAGCTATGTTGTGGATATGTCATCCCAAGTTCTTCACAGTATTTTACGATGGTTTAAACCCGGAGCTGTTCTCTCACACCCTTTTGGATATGATGGCACA ATATTCGTCTGGCAAACAAGGGTTGGACGAGCATGGAACATGGCAGGATCAACTGAAAGATGTGAAGATAATAACGAGAAATGTTGATAAGATCCTGGAG GGAGAAGAAGAAGAGGAGTTGATGGATATTTCAACGGATATGGCTGCATCACTTGCCACCAAGAAACGAGTTTGCTTCCTGTTAACTTGGCACTAG
AA sequence Show only first row Show all	>Lus10008360 pacid=23178488 polypeptide=Lus10008360 locus=Lus10008360.g ID=Lus10008360.BGIv1.0 annot-version=v1.0 MSVAEEFIVDGDELRERRSDFDNSEDERRRSRIGNFRKKAMNASTKFTHSLKKRGKKKIDYRVSSVPIEDVRDEEEERVVSQFRQRLLERDLLPPMHDDY HTMLRFLKARDFNIEKTIQMWEEMLNWRIEYGTDTILEDFEFEELEEVLQYYPQGYHGVDREGRPVYIERLGKAHPTKLMRITTIDRYLKYHVQEFERAL REKFPACSISAKRKIWATTTILDVNGLGMKNFSRTAANLLAAITKIDNSYYPETLHRMYIVNAGPGFKKMLWPAAQKFLDAKTTSKIHVLEPKSLHKLLE VIDPSQLPDFLGGSCTCSAEGGCLKSNKGPWNDPEVMKVAESDLDCIELPLTESSSSAPVHDEARVSDANGYYSCDDSSTLHEKGHCKDRLLTTCPSEAA PYLLGQHFCRFNIAEEKLGKGKVICAARALTLFVAKLIALLHQLPFKHWRRQNKNIHPSSSVEGNVRGSDSKAEGKASKPKEEDKIAPCMERLQRLERLV VELSNKPPQIPKEKEQVLVESLDRIKSVEFDLEKTKRVLHSAVVKQLEIAHLLEGLREESQFRWSFFEIYKNVKFVTLSLVNGTLISPAEEDDELVLHSA RKRRLTTPSSRPTSNTLALETDFSLKCAQKAILKAMLWICHPKFFTVFYDGLNPELFSHTLLDMMAQYSSGKQGLDEHGTWQDQLKDVKIITRNVDKILE GEEEEELMDISTDMAASLATKKRVCFLLTWH

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55690			Sec14p-like phosphatidylinosit...		Lus10008360 [exp]	0	1
AT1G04500			CCT motif family protein (.1)		Lus10023727 [exp]	1.0	0.8727
AT4G39210		APL3	Glucose-1-phosphate adenylyltr...		Lus10040437 [exp]	4.0	0.7991
AT2G30990			Protein of unknown function (D...		Lus10020709 [exp]	4.0	0.7570
AT1G45207			Remorin family protein (.2)		Lus10005708 [exp]	4.0	0.8110
AT5G14210			Leucine-rich repeat protein ki...		Lus10022340 [exp]	8.8	0.7850
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Lus10041808 [exp]	10.1	0.8003
AT2G45670			calcineurin B subunit-related ...		Lus10015853 [exp]	12.3	0.7502
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Lus10028358 [exp]	12.4	0.7783
AT1G23880			NHL domain-containing protein ...		Lus10039421 [exp]	17.2	0.7916
AT1G75170			Sec14p-like phosphatidylinosit...		Lus10014312 [exp]	21.6	0.7583

Compare expression of checked genes

Lus10008360 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.