Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66930 250 / 6e-75 Protein kinase superfamily protein (.1) AT1G66920 234 / 2e-69 Protein kinase superfamily protein (.1.2) AT4G18250 237 / 7e-69 receptor serine/threonine kinase, putative (.1) AT5G38260 232 / 2e-68 Protein kinase superfamily protein (.1) AT1G66910 231 / 4e-68 Protein kinase superfamily protein (.1) AT1G66980 237 / 5e-68 GDPDL2, SNC4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) AT1G67000 234 / 8e-68 Protein kinase superfamily protein (.1) AT5G38280 231 / 8e-68 PR5K PR5-like receptor kinase (.1) AT5G39030 232 / 3e-67 Protein kinase superfamily protein (.1) AT5G39020 230 / 2e-66 Malectin/receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027119 [exp] 744 / 0 AT5G38260 210 / 3e-60 Protein kinase superfamily protein (.1) Lus10022359 [exp] 682 / 0 AT1G66980 322 / 3e-101 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10025492 [exp] 659 / 0 AT5G38260 326 / 1e-102 Protein kinase superfamily protein (.1) Lus10025554 [exp] 595 / 0 AT5G38260 220 / 2e-64 Protein kinase superfamily protein (.1) Lus10014924 [exp] 471 / 1e-160 AT1G67000 349 / 5e-112 Protein kinase superfamily protein (.1) Lus10027117 [exp] 454 / 2e-159 AT1G18390 47 / 8e-06 Protein kinase superfamily protein (.1.2) Lus10008335 [exp] 429 / 4e-143 AT1G70250 316 / 8e-98 receptor serine/threonine kinase, putative (.1) Lus10025545 [exp] 415 / 5e-143 AT5G39020 316 / 1e-101 Malectin/receptor-like protein kinase family protein (.1) Lus10027006 [exp] 393 / 2e-133 AT1G66980 218 / 1e-66 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G125000 [exp] 516 / 5e-178 AT5G38260 318 / 7e-100 Protein kinase superfamily protein (.1) Potri.015G018600 [exp] 504 / 3e-173 AT1G66920 351 / 9e-113 Protein kinase superfamily protein (.1.2) Potri.007G125450 [exp] 504 / 3e-173 AT5G38260 300 / 2e-92 Protein kinase superfamily protein (.1) Potri.007G125800 [exp] 504 / 4e-173 AT5G38260 308 / 1e-95 Protein kinase superfamily protein (.1) Potri.007G126100 [exp] 495 / 2e-169 AT1G70250 290 / 3e-87 receptor serine/threonine kinase, putative (.1) Potri.017G009100 [exp] 481 / 2e-163 AT5G38280 331 / 1e-103 PR5-like receptor kinase (.1) Potri.017G007900 [exp] 459 / 3e-155 AT5G38260 324 / 1e-101 Protein kinase superfamily protein (.1) Potri.007G125200 [exp] 438 / 2e-149 AT5G38260 300 / 2e-94 Protein kinase superfamily protein (.1) Potri.017G008600 [exp] 407 / 5e-136 AT5G38260 325 / 9e-103 Protein kinase superfamily protein (.1) Potri.017G009400 [exp] 386 / 9e-127 AT5G38280 329 / 4e-103 PR5-like receptor kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10008362 pacid=23178458 polypeptide=Lus10008362 locus=Lus10008362.g ID=Lus10008362.BGIv1.0 annot-version=v1.0 ATGATGGAATCACCATTTATATTATTGCTGCTGCAGCTACTTCTCCAGATATGCCAAGCTGATCAAGGGAACTGCGAACCTTCGTCCTGTGGGAACATCC CAATCATTAAGTACCCTTTTCGACTCACGACTGATCCCCAAAGCTGTGGAGATCACAACCATAACCTGTCATGTGAGAGCAACAGGACGGTTGCGTATCT GAAGAGCTTTTCTGCAAGATACTATGTGCAGGCAATCAACTACAACAACTCGACAATCCGTTTGGTGGATGATGGTGTGGTTGAAGGAAACTACTCCTCC CTCCCCACTCACCCTTTGTCCGAAAAAAGCTTCACTTCCCACGATGATCCTTACATCGCCACAAGAGTTACAGGGCCGAATCTACTCTTCTTACTTACAT ATGAGCACCTGAATGAAGTCTTGACTCTTGTCAGCTGTCAGAATCCTCATGTCAGTTCTGCAATGTTTATCAAGACAACTCCTTGCATCAACGGATCGAA AAATTCCTCAACATACAATTATCATGCGGTTATAGCTGGTGGTGGTGTGGATTTATTTAGTTTGCCCCAGGATTGCAAAGTAGAGATGATGACTATGTTA CCTGGAAGGAAGGATTATTCCCAGCTCTCATTTCAACAAGTTCACCAGCAACTTGAATATGGGTTCGAGCTTACGTGGCACCGTTACATATCCACTGACT GCTTTGGGTTGACTGATCGATGCTACCTTGATGGCGGCTACAAAAGGCCTCACAATGCTCACCTGTTGATAAAAGCTCTTGGGACCCCAGTCGCAATTGC ATTTCTGGTATATAAATGGCGAAGAAGGCATCTATCAGCATACGACAACATAGAGGAATTCCTTGGGAGCCACAACAACCTCCTCATTCCAGTTAGGTAC TCGTACTCAAACATCAAGAAGTTCACTGACGGCTTCAAGGACAAGCTAGGCGAAGGTGGATTTGGTTTTGTTTACAAAGCCAAGCTCCGGAGTGGCAGTT TTGCAGCTGTGAAGATGCTTGGAGGAAAGTCCACAGCTGGTGGAGTCCAAGACTTCATCAACGAAGTTGTTACCATTGGAACGATTCACCATGCTAATGT GGTAAAACTTATCGGATTCTGTTCTGAAGGATCGAAGCGTGCTCTCGTTTATGAGTTCATGCCAAATGGTTCCCTTGACAAGTACATTTTTTGCAAACAA CAAGGACGTGTAGCTTTGAACATTGAACAACTGTATCGCATTCCCATCGGAGTGGCTCGCGGGATTGAATACCTGCATAACGGGTGTGCCATGCAGATTC TGCATTTCAACATCAAGCCCCACAACATTCTTCTTGATGTCAACTTTAACCCGAAATTGTCATACTTCGGGTTGGCTAGGCTACATTATGCAGGCGATAG AGTTGCAACTCTCACCGCGGCAAGAGGAACCATCGGGTACATGGCGCCAGAGCTGTTCTACAGGAACATCGGGAGCGTCTCCTACAAAGCTGATGTCTAT AGCTTTGGGATGTTACTGATGGACATGGCAGAGAAAAGGAATAACTTGAATGCTGCAACAAGTCATTCGAGTCAAGTTTACTTCCCGTTCTGA
AA sequence Show only first row Show all	>Lus10008362 pacid=23178458 polypeptide=Lus10008362 locus=Lus10008362.g ID=Lus10008362.BGIv1.0 annot-version=v1.0 MMESPFILLLLQLLLQICQADQGNCEPSSCGNIPIIKYPFRLTTDPQSCGDHNHNLSCESNRTVAYLKSFSARYYVQAINYNNSTIRLVDDGVVEGNYSS LPTHPLSEKSFTSHDDPYIATRVTGPNLLFLLTYEHLNEVLTLVSCQNPHVSSAMFIKTTPCINGSKNSSTYNYHAVIAGGGVDLFSLPQDCKVEMMTML PGRKDYSQLSFQQVHQQLEYGFELTWHRYISTDCFGLTDRCYLDGGYKRPHNAHLLIKALGTPVAIAFLVYKWRRRHLSAYDNIEEFLGSHNNLLIPVRY SYSNIKKFTDGFKDKLGEGGFGFVYKAKLRSGSFAAVKMLGGKSTAGGVQDFINEVVTIGTIHHANVVKLIGFCSEGSKRALVYEFMPNGSLDKYIFCKQ QGRVALNIEQLYRIPIGVARGIEYLHNGCAMQILHFNIKPHNILLDVNFNPKLSYFGLARLHYAGDRVATLTAARGTIGYMAPELFYRNIGSVSYKADVY SFGMLLMDMAEKRNNLNAATSHSSQVYFPF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66930			Protein kinase superfamily pro...		Lus10008362 [exp]	0	1
AT5G65550			UDP-Glycosyltransferase superf...		Lus10008956 [exp]	1.0	0.9370
AT5G16020		GEX3	gamete-expressed 3 (.1)		Lus10034090 [exp]	3.9	0.8696
AT1G11070			unknown protein		Lus10038307 [exp]	3.9	0.8677
AT1G69840			SPFH/Band 7/PHB domain-contain...		Lus10036715 [exp]	4.2	0.8844
AT2G16730		BGAL13	beta-galactosidase 13, glycosy...		Lus10020877 [exp]	4.9	0.8692
AT5G27530			Pectin lyase-like superfamily ...		Lus10036205 [exp]	4.9	0.8640
AT1G66980		GDPDL2, SNC4	Glycerophosphodiester phosphod...		Lus10022359 [exp]	5.5	0.8473
AT2G33050		AtRLP26	receptor like protein 26 (.1)		Lus10019693 [exp]	6.5	0.8645
AT3G16175			Thioesterase superfamily prote...		Lus10037582 [exp]	6.5	0.8181
AT2G32460	MYB	ATMYB101, AtM1	ARABIDOPSIS THALIANA MYB 1, my...		Lus10040063 [exp]	7.3	0.8464

Compare expression of checked genes

Lus10008362 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.