Plant FIBer expression Database

Lus10008364 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G30695 78 / 1e-17 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004790
[exp]
323 / 1e-112 AT2G30695 97 / 2e-24 unknown protein
Lus10008363
[exp]
64 / 5e-12 AT2G30695 166 / 1e-51 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G125600
[exp]
168 / 5e-52 AT2G30695 94 / 2e-23 unknown protein
Potri.013G125500
[exp]
69 / 3e-14 AT2G30695 167 / 3e-52 unknown protein
PFAM info
Representative CDS sequence
>Lus10008364 pacid=23145279 polypeptide=Lus10008364 locus=Lus10008364.g ID=Lus10008364.BGIv1.0 annot-version=v1.0
ATGGCAGCTAAGTTGGTTTCCTCCTCACAGCTTCAACAACTCCCCACTATGGTTTCTGCTGCTGGATACAAGAATCTGGCTTGGAATTGCTCGACAATAT
CCTTCAGTTTTTGTAACACACGGCAGCAACGATTCAGCAACAGGAGGAGGATAGTGTTATCTTCACGGTTATTTGGTAATGGCGTCAGGCCTATTTCTGC
TACGGACTCAGGCGTGGAAACATCAATTACAGATGGCAAGGACAGTGCCATAACTGTGAAAGATGCTCAAGTAGTTGTAGAGTCTCAAGACGAAAACAGC
ATTCAGCTCAGAGTTAATTTGGCGGGAGATGTAACAGAAAAAGTTTTCGGCAAGGTGTTGAGAAATTTGGCTCTTACAGCACCACCAATCCCAGGATTTC
GCAGACAAAAGGGAGCTAACAATCTCTTTAACATACTTTGTCTCATTTTTCCATGGTGCTTCGGGCTGAAACCAGGAAAGACGACTCGGGTTCCTAGGGA
GTTCCTCGTCCAGATCCTTGGCGAAGAGCGGGAAAATCTGAAAGTGAAGGAGAACAAAGTGACCACAACTCAGACAGCAGAAGAGCTGAAGAAGCTGTTT
GAACCAGGGAAAGAATTTGGGTTCAATGCCACTCTGGAGCTTGAACCCGTTGTTGCAACTCAAGCTGAAACTTAG
AA sequence
>Lus10008364 pacid=23145279 polypeptide=Lus10008364 locus=Lus10008364.g ID=Lus10008364.BGIv1.0 annot-version=v1.0
MAAKLVSSSQLQQLPTMVSAAGYKNLAWNCSTISFSFCNTRQQRFSNRRRIVLSSRLFGNGVRPISATDSGVETSITDGKDSAITVKDAQVVVESQDENS
IQLRVNLAGDVTEKVFGKVLRNLALTAPPIPGFRRQKGANNLFNILCLIFPWCFGLKPGKTTRVPREFLVQILGEERENLKVKENKVTTTQTAEELKKLF
EPGKEFGFNATLELEPVVATQAET

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G30695 unknown protein Lus10008364
[exp]
0 1
AT2G38140 PSRP4 plastid-specific ribosomal pro... Lus10002497
[exp]
1.0 0.9850
AT5G11450 PPD5 PsbP domain protein 5, Mog1/Ps... Lus10022110
[exp]
2.4 0.9804
AT2G01918 PQL3 PsbQ-like 3 (.1) Lus10004054
[exp]
2.8 0.9741
AT3G15520 Cyclophilin-like peptidyl-prol... Lus10037891
[exp]
3.5 0.9706
AT3G63190 HFP108, AtcpRRF... "ribosome recycling factor, ch... Lus10042587
[exp]
3.5 0.9763
AT3G56910 PSRP5 plastid-specific 50S ribosomal... Lus10035720
[exp]
4.9 0.9621
AT2G33450 Ribosomal L28 family (.1) Lus10023747
[exp]
5.9 0.9703
AT3G56910 PSRP5 plastid-specific 50S ribosomal... Lus10037307
[exp]
6.3 0.9670
AT5G30510 ARRPS1, RPS1 ribosomal protein S1 (.1) Lus10037822
[exp]
6.3 0.9724
AT2G01755 unknown protein Lus10030691
[exp]
9.6 0.9484

Lus10008364 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.