Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44190 284 / 2e-94 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT5G22140 228 / 4e-73 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001856 [exp] 232 / 8e-74 AT3G44190 506 / 1e-180 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10013339 [exp] 223 / 4e-70 AT3G44190 497 / 6e-177 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10004789 [exp] 115 / 3e-31 AT3G44190 140 / 4e-41 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G217800 [exp] 213 / 1e-66 AT3G44190 536 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF07992 [flax] [poplar] Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10008365 pacid=23145284 polypeptide=Lus10008365 locus=Lus10008365.g ID=Lus10008365.BGIv1.0 annot-version=v1.0 ATGGTGAAATGCAGAAATGAAACACTCAAGCTTTCCAGCGATATTTTTCAGTCTTCTTCCTTATCTTCTCCTCTCAATCGAGCTCATCTGAAAGAAGGCG ACAAGGCAGTTTCTTCATCGTCGGGAAATGGAAGGCGCTTGGTCGTTGTCGGGGGAGGTATTGCTGGTTCAGTGCTGGCCAAATCTGCCCAATTCACTAC CGACGTCACGCTCATTGACCCGAAGGACTATTTGGAGATAACTTGGGCGAACTTGAGGGGTATGGTTGAGCCTTCCTTGGCAGAGAAAGCAGTGATCAAG CATCGAGATTACTTCACGAATGGCCGCATCATAACATCCAATGCGATCAATATCACTGAGAAAGAAGTATTGAGTGAAGGAGGAGAATCTGTCGCCTATG ACTATCTTGTCATTGCAACTGGTCACAAGGATCCTGTCCCCAAAACTAGAAAGGAAAGACTTTCTCAATACCATTCAGACAATGAAAAGATAAAGTCTGT TAAATCCATTTTGATTGTTGGTGGGGATCCTACTAGTGTTGAACTTGCTGGAAAAATAGCAGTTGATTACCCGATGAAAGGAGGGAAACCCTTGGCCTCA TCATGGCTCAAGAATACAGTGCTGAAGAATAACTTGGATTCTAAAGGAAGGTTGATGGTTGATGAATATCTCAAGGAGCTAAAGCAAGGATATCTAGCAC AAAACCATACTTCAATGGTGGCAAAAAACCTCAAGATAATTCTCAACAGAGAAAGAGAGTGCAGAATGAATAAGTACAAGCCAGGATCAGAGATAGCAAT CGTATCACTTGACAGAAGGGAAGTAGTGGCACAGTTTCCATTTACTACAGTCAGTGGCATTCTTCCAAGATTTCTTAAATCTGGAGACTTGTTTGTCGGG AAAACAAGAAAGCTAATGGGATTAGACCCCAATGTTATAGACCATTAA
AA sequence Show only first row Show all	>Lus10008365 pacid=23145284 polypeptide=Lus10008365 locus=Lus10008365.g ID=Lus10008365.BGIv1.0 annot-version=v1.0 MVKCRNETLKLSSDIFQSSSLSSPLNRAHLKEGDKAVSSSSGNGRRLVVVGGGIAGSVLAKSAQFTTDVTLIDPKDYLEITWANLRGMVEPSLAEKAVIK HRDYFTNGRIITSNAINITEKEVLSEGGESVAYDYLVIATGHKDPVPKTRKERLSQYHSDNEKIKSVKSILIVGGDPTSVELAGKIAVDYPMKGGKPLAS SWLKNTVLKNNLDSKGRLMVDEYLKELKQGYLAQNHTSMVAKNLKIILNRERECRMNKYKPGSEIAIVSLDRREVVAQFPFTTVSGILPRFLKSGDLFVG KTRKLMGLDPNVIDH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G44190			FAD/NAD(P)-binding oxidoreduct...		Lus10008365 [exp]	0	1
AT3G06880			Transducin/WD40 repeat-like su...		Lus10038340 [exp]	12.3	0.8281
AT2G25560			DNAJ heat shock N-terminal dom...		Lus10032540 [exp]	15.2	0.8044
AT3G25470			bacterial hemolysin-related (....		Lus10002144 [exp]	18.9	0.8266
AT1G19400			Erythronate-4-phosphate dehydr...		Lus10042323 [exp]	20.0	0.8039
AT2G30695			unknown protein		Lus10004791 [exp]	21.2	0.7633
AT1G64355			unknown protein		Lus10032371 [exp]	21.4	0.8027
AT1G60600		ABC4	ABERRANT CHLOROPLAST DEVELOPME...		Lus10032658 [exp]	26.4	0.8231
AT5G52970			thylakoid lumen 15.0 kDa prote...		Lus10023013 [exp]	29.5	0.8068
					Lus10040651 [exp]	30.3	0.7147
AT2G41720		EMB2654	EMBRYO DEFECTIVE 2654, Tetratr...		Lus10018075 [exp]	33.2	0.7793

Compare expression of checked genes

Lus10008365 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.