Plant FIBer expression Database

Lus10008366 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G22120 291 / 3e-96 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004788
[exp]
610 / 0 AT5G22120 340 / 4e-115 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G216500
[exp]
328 / 9e-111 AT5G22120 363 / 2e-124 unknown protein
PFAM info
Representative CDS sequence
>Lus10008366 pacid=23145282 polypeptide=Lus10008366 locus=Lus10008366.g ID=Lus10008366.BGIv1.0 annot-version=v1.0
ATGGAGAACAGAAACGCTGACAGATCACCGCATGATTCCCAGATCAATTGGAACTGGAGCGAGGTGGTAGAGGATCTTATATCTTCCGGTGACACTGACG
CTGCCATCTCTCGTCTGGAATCCGTAGTGTCCCAACTCCAGCTCCTCACTCCACCTTCTCAGGTATTGAATCTCCAATTGGCTTCCGCTCTCACTGAATT
AGCCACCCTCAACTCATCCAAGGACTTCTCCCTCAAATCTGACGAACTTCACTCTCGCGCCTCGCTCCTCAAGCACCAGGCTCTTCACTCTAACCTTACT
GCGGATGGGGAGAAGCACGTACAGTCAGAGGTTGGTCAAGATTTGAACTCCAAGGCTGCTGATTCTGCCTTCGATTCTGGCGAAGGACCTGTTGCGAATA
CCTCACTTCTGTCTGCTTCCATTGATGAAGCTTCAGATGATGATTGGGAAGCTGCGGCAGATCGTGAACCCAATGAATTGCTCCCTGCCAACTCTCCACC
GAGTGTGTCGAAAATTTCAGATAAAGATAAGGTGGATCAAAACCCTAAGCGTCATGGACGAGGCACATTCTCTTACAAGAAAAATAGATTGTACAGTGAC
CAGCAATCTGATGGATCTCTTTCTGATGATTCAGAGAATGATATAGTGAGTGAAATTGGACAGCCTAGTAGAAAATCAAGACAAGCTACGTTTGGTACAA
ATCATGTGCTAGTCCTGGCTGACTTTCCTCCAAGCACTAAAACAACAGATCTGGAAAGGCTTTTAGATGGCTTCAAAGATCGTGGAGTCTCCATTCGCTG
GGTTAATGATACAACCGCTCTTGCAGTCTTTAGAACCCCATCCATTGCGTTGGAGGCCCACAACTCTATAAAGTTTCCATTCACTGTTCGTGTTCTGAAT
GAGGATGATATCCGTACGGGATCTATATCAACCACAGACTTGGAAGCTCCACGGCAAAGGCCGAAAACATCAACAAGAACAGCTCAAAGGCTGATAGCAC
AAGGGATGGGACTGAAGTTGCCTTCCAGTAGCTTTGGTTCAAGAGATCTGAAGAAGCAGGAAGAAGCTAGAAAGAACAGAATAGTTACGAGGCAAAAGCT
GAGGGACGATGCATGGGGTGACGAGTAA
AA sequence
>Lus10008366 pacid=23145282 polypeptide=Lus10008366 locus=Lus10008366.g ID=Lus10008366.BGIv1.0 annot-version=v1.0
MENRNADRSPHDSQINWNWSEVVEDLISSGDTDAAISRLESVVSQLQLLTPPSQVLNLQLASALTELATLNSSKDFSLKSDELHSRASLLKHQALHSNLT
ADGEKHVQSEVGQDLNSKAADSAFDSGEGPVANTSLLSASIDEASDDDWEAAADREPNELLPANSPPSVSKISDKDKVDQNPKRHGRGTFSYKKNRLYSD
QQSDGSLSDDSENDIVSEIGQPSRKSRQATFGTNHVLVLADFPPSTKTTDLERLLDGFKDRGVSIRWVNDTTALAVFRTPSIALEAHNSIKFPFTVRVLN
EDDIRTGSISTTDLEAPRQRPKTSTRTAQRLIAQGMGLKLPSSSFGSRDLKKQEEARKNRIVTRQKLRDDAWGDE

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G22120 unknown protein Lus10008366
[exp]
0 1
AT1G07470 Transcription factor IIA, alph... Lus10016503
[exp]
1.4 0.8559
AT1G16900 Alg9-like mannosyltransferase ... Lus10028153
[exp]
3.9 0.8619
AT1G30970 C2H2ZnF SUF4 suppressor of FRIGIDA4, zinc f... Lus10036234
[exp]
6.0 0.8382
AT2G18290 EMB2783, APC10 EMBRYO DEFECTIVE 2783, anaphas... Lus10028308
[exp]
6.3 0.8106
AT1G74960 ATKAS2, KAS2, F... ARABIDOPSIS BETA-KETOACYL-ACP ... Lus10034886
[exp]
11.2 0.8375
AT5G49665 Zinc finger (C3HC4-type RING f... Lus10042930
[exp]
19.2 0.8321
AT3G20550 FHA DDL DAWDLE, SMAD/FHA domain-contai... Lus10019235
[exp]
22.0 0.8390
AT3G14000 ATBRXL2, BRX-LI... DZC (Disease resistance/zinc f... Lus10000884
[exp]
22.7 0.7933
AT5G03500 Mediator complex, subunit Med7... Lus10029326
[exp]
23.8 0.7816
AT1G50660 unknown protein Lus10021521
[exp]
24.6 0.8505

Lus10008366 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.