Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11840 249 / 6e-78 PUB24 plant U-box 24 (.1) AT2G35930 214 / 4e-65 PUB23 plant U-box 23 (.1) AT3G52450 201 / 1e-59 PUB22 plant U-box 22 (.1) AT1G66160 107 / 4e-25 ATCMPG1 "CYS, MET, PRO, and GLY protein 1", CYS, MET, PRO, and GLY protein 1 (.1.2) AT3G19380 103 / 6e-24 PUB25 plant U-box 25 (.1) AT5G37490 99 / 2e-22 ARM repeat superfamily protein (.1) AT1G49780 96 / 2e-21 PUB26 plant U-box 26 (.1) AT3G54850 89 / 1e-18 ATPUB14 plant U-box 14 (.1) AT3G18710 81 / 3e-16 ATPUB29 ARABIDOPSIS THALIANA PLANT U-BOX 29, plant U-box 29 (.1) AT5G64660 79 / 7e-16 ATCMPG2 "CYS, MET, PRO, and GLY protein 2", CYS, MET, PRO, and GLY protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000800 [exp] 736 / 0 AT3G11840 293 / 7e-95 plant U-box 24 (.1) Lus10004191 [exp] 249 / 4e-76 AT3G11840 300 / 2e-95 plant U-box 24 (.1) Lus10013584 [exp] 236 / 4e-73 AT2G35930 471 / 2e-165 plant U-box 23 (.1) Lus10029395 [exp] 234 / 3e-72 AT3G11840 296 / 8e-96 plant U-box 24 (.1) Lus10021267 [exp] 229 / 8e-71 AT2G35930 474 / 5e-167 plant U-box 23 (.1) Lus10016166 [exp] 204 / 4e-61 AT3G52450 462 / 2e-161 plant U-box 22 (.1) Lus10029393 [exp] 203 / 1e-60 AT3G52450 462 / 1e-161 plant U-box 22 (.1) Lus10001079 [exp] 125 / 2e-31 AT5G37490 290 / 1e-93 ARM repeat superfamily protein (.1) Lus10040124 [exp] 108 / 4e-27 AT1G66160 154 / 6e-45 "CYS, MET, PRO, and GLY protein 1", CYS, MET, PRO, and GLY protein 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G216300 [exp] 380 / 8e-130 AT3G11840 303 / 6e-99 plant U-box 24 (.1) Potri.009G016100 [exp] 376 / 4e-128 AT3G11840 326 / 6e-108 plant U-box 24 (.1) Potri.006G202700 [exp] 316 / 1e-104 AT3G11840 362 / 3e-122 plant U-box 24 (.1) Potri.016G069500 [exp] 294 / 4e-96 AT3G11840 367 / 7e-124 plant U-box 24 (.1) Potri.016G069400 [exp] 239 / 9e-75 AT3G52450 511 / 0.0 plant U-box 22 (.1) Potri.006G202600 [exp] 233 / 3e-72 AT3G52450 511 / 0.0 plant U-box 22 (.1) Potri.009G016200 [exp] 225 / 3e-69 AT2G35930 475 / 4e-167 plant U-box 23 (.1) Potri.001G216100 [exp] 215 / 2e-65 AT2G35930 452 / 5e-158 plant U-box 23 (.1) Potri.002G174500 [exp] 155 / 1e-42 AT2G35930 249 / 9e-79 plant U-box 23 (.1) Potri.014G101100 [exp] 140 / 3e-37 AT2G35930 266 / 3e-85 plant U-box 23 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Lus10008368 pacid=23145275 polypeptide=Lus10008368 locus=Lus10008368.g ID=Lus10008368.BGIv1.0 annot-version=v1.0 ATGGAAGACATTGAAATCCCAGAATACTTCATCTGTCCAATTTCGCTGGAAATGATGAAAGACCCGGTGACAGCCATTACCGGCATCACCTACGATCGCG AGAGCATCGAACACTGGCTCAACAATTCCGCACCACCCTCCGTGGTAGTCTGCCCTGTCTCCAAACAGCCCTTACCAAGAAACTCAGACCTAACACCAAA CCACACCCTCCGGCGCCTCATACAAGGCTGGTGCACCCTCAACGCTCAAAAAAGAATCCCCACTCCCAAATCCCCTCTCAACAACTCTCATGTTGCCAAG CTCCTCCGTGACCTCCACAACGGTGGTACTGATTCCTCATCCTCACTCCAGGCCGTCAACAAACTAGACGTCCTTGCTTCCGAGAGCGATCACAACCGAG CATGCATTGCCAACTCAGGAGCCGCCAAGCCCATGGCCTCCTTCATATTGAACATGTATAAGGAGAGACGAAGAGCCCAAGGATTGGAGCAAGCACTTCG AGTTTCCAATCTAGCTTGGAACCACACCCCTGAACCAACTGTTAAGCTTCTCGTTAGAGAAAATGAGGGGCAGCTCATCAACTCACTCACCTGGATTATT TCGTGTTCGAAAGACGACGAGGTGGTAGTGACGCAAGCAGTTTGTCTTTTGAATAGAGTGATCCGGTTTGCTAGTGCCACTTGTTTGGAGAGGCTAGACT TGGACTTATTCTTCCGAGTGGTTGTCACAAGTGTATTGGGAAAGCGGACCTCCTCGAAACTTGCGAGGCGGTCTGCTCTCCAGATGCTGATAGAGGCATG CCCTTGGGGTGCCAACAGGGCTAAAATGGTGGAGGTGAACACGGTCCACGAGCTTATTGAGATGGAGTTGAATCATAATCAACAACAACAATCGAGTAAT AATAATAAGCACACGACGGAGCTAGCGTTCGATCTGCTTGCTAGGCTGAGCACAAGTGCGGACGGGAGGGAGAAGTTGCTGGTACACGCAGCCGGGTTAG CAGTGGTGGCAAAGAAGACTTTGAGGGTCTCGGCTGCGACAGACGACCGGGCAGTGCAGATAATGGGAATGATAGCCAAGTTGGGGTCCGGGAAAGAGGA GATGTTGAGGGTTGGGGGTGTGACAAAGCTGTGCATGGTGATTCAGGCTGATTGTGCCGCTTATTTGAAAGACAAGGCTAGGAAGATTTTGAGAGAAAAT TCTTCCTTCTGGAACAACTCTCCTTGCGTTGCTGTTTATCTCATCACTTGGCATCCCCGTCAATATTCCTCAACACAAATTAAGCTACCCTCTACTCAAA CCCCCCACACATAA
AA sequence Show only first row Show all	>Lus10008368 pacid=23145275 polypeptide=Lus10008368 locus=Lus10008368.g ID=Lus10008368.BGIv1.0 annot-version=v1.0 MEDIEIPEYFICPISLEMMKDPVTAITGITYDRESIEHWLNNSAPPSVVVCPVSKQPLPRNSDLTPNHTLRRLIQGWCTLNAQKRIPTPKSPLNNSHVAK LLRDLHNGGTDSSSSLQAVNKLDVLASESDHNRACIANSGAAKPMASFILNMYKERRRAQGLEQALRVSNLAWNHTPEPTVKLLVRENEGQLINSLTWII SCSKDDEVVVTQAVCLLNRVIRFASATCLERLDLDLFFRVVVTSVLGKRTSSKLARRSALQMLIEACPWGANRAKMVEVNTVHELIEMELNHNQQQQSSN NNKHTTELAFDLLARLSTSADGREKLLVHAAGLAVVAKKTLRVSAATDDRAVQIMGMIAKLGSGKEEMLRVGGVTKLCMVIQADCAAYLKDKARKILREN SSFWNNSPCVAVYLITWHPRQYSSTQIKLPSTQTPHT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11840		PUB24	plant U-box 24 (.1)		Lus10008368 [exp]	0	1
AT3G26770			NAD(P)-binding Rossmann-fold s...		Lus10021313 [exp]	5.6	0.9849
AT1G67070		PMI2, DIN9	PHOSPHOMANNOSE ISOMERASE 2, DA...		Lus10015062 [exp]	6.5	0.9810
AT1G23300			MATE efflux family protein (.1...		Lus10026324 [exp]	8.1	0.9671
AT4G04450	WRKY	ATWRKY42, WRKY4...	WRKY family transcription fact...		Lus10020023 [exp]	8.4	0.9826
AT1G66160		ATCMPG1	"CYS, MET, PRO, and GLY protei...		Lus10040124 [exp]	13.2	0.9817
AT1G80450			VQ motif-containing protein (....		Lus10026247 [exp]	14.7	0.9803
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10028509 [exp]	15.0	0.9810
AT3G02840			ARM repeat superfamily protein...		Lus10040125 [exp]	16.4	0.9813
AT4G04450	WRKY	ATWRKY42, WRKY4...	WRKY family transcription fact...		Lus10015546 [exp]	17.9	0.9809
AT1G47670			Transmembrane amino acid trans...		Lus10022641 [exp]	18.0	0.9774

Compare expression of checked genes

Lus10008368 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.