Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27210 1618 / 0 BSL3 BRI1 suppressor 1 (BSU1)-like 3 (.1), BRI1 suppressor 1 (BSU1)-like 3 (.2) AT1G08420 1612 / 0 BSL2 BRI1 suppressor 1 (BSU1)-like 2 (.1), BRI1 suppressor 1 (BSU1)-like 2 (.2) AT4G03080 670 / 0 BSL1 BRI1 suppressor 1 (BSU1)-like 1 (.1) AT1G03445 471 / 4e-152 BSU1 BRI1 SUPPRESSOR 1, Serine/threonine protein phosphatase family protein (.1) AT5G59160 273 / 1e-83 PPO, TOPP2 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) AT5G27840 270 / 1e-82 TOPP8 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2) AT2G39840 269 / 6e-82 TOPP4 type one serine/threonine protein phosphatase 4 (.1) AT1G64040 268 / 6e-82 TOPP3 type one serine/threonine protein phosphatase 3 (.1) AT3G46820 263 / 4e-80 TOPP5 type one serine/threonine protein phosphatase 5 (.1) AT2G29400 262 / 1e-79 PP1-AT, TOPP1 type one protein phosphatase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013357 [exp] 1665 / 0 AT1G08420 1713 / 0.0 BRI1 suppressor 1 (BSU1)-like 2 (.1), BRI1 suppressor 1 (BSU1)-like 2 (.2) Lus10004100 [exp] 1620 / 0 AT1G08420 1686 / 0.0 BRI1 suppressor 1 (BSU1)-like 2 (.1), BRI1 suppressor 1 (BSU1)-like 2 (.2) Lus10009783 [exp] 549 / 0 AT2G27210 1281 / 0.0 BRI1 suppressor 1 (BSU1)-like 3 (.1), BRI1 suppressor 1 (BSU1)-like 3 (.2) Lus10024772 [exp] 422 / 5e-141 AT4G03080 478 / 5e-165 BRI1 suppressor 1 (BSU1)-like 1 (.1) Lus10024773 [exp] 410 / 9e-132 AT4G03080 853 / 0.0 BRI1 suppressor 1 (BSU1)-like 1 (.1) Lus10004989 [exp] 273 / 1e-83 AT5G59160 565 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Lus10016489 [exp] 270 / 3e-82 AT5G59160 570 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Lus10020659 [exp] 270 / 2e-80 AT3G05580 562 / 0.0 type one protein phosphatase 9, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Lus10001025 [exp] 265 / 2e-80 AT2G39840 602 / 0.0 type one serine/threonine protein phosphatase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G215700 [exp] 1649 / 0 AT2G27210 1626 / 0.0 BRI1 suppressor 1 (BSU1)-like 3 (.1), BRI1 suppressor 1 (BSU1)-like 3 (.2) Potri.009G016900 [exp] 1645 / 0 AT2G27210 1588 / 0.0 BRI1 suppressor 1 (BSU1)-like 3 (.1), BRI1 suppressor 1 (BSU1)-like 3 (.2) Potri.014G135800 [exp] 662 / 0 AT4G03080 1441 / 0.0 BRI1 suppressor 1 (BSU1)-like 1 (.1) Potri.002G213300 [exp] 653 / 0 AT4G03080 1439 / 0.0 BRI1 suppressor 1 (BSU1)-like 1 (.1) Potri.005G024100 [exp] 285 / 8e-88 AT5G27840 553 / 0.0 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2) Potri.013G045900 [exp] 273 / 2e-83 AT2G39840 564 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.019G018000 [exp] 273 / 3e-83 AT2G39840 554 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.001G245700 [exp] 270 / 2e-82 AT2G29400 556 / 0.0 type one protein phosphatase 1 (.1) Potri.013G014700 [exp] 270 / 4e-82 AT3G05580 563 / 0.0 type one protein phosphatase 9, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Potri.009G037700 [exp] 267 / 2e-81 AT5G59160 553 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF07646 [flax] [poplar] Kelch_2 Kelch motif CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10008369 pacid=23145286 polypeptide=Lus10008369 locus=Lus10008369.g ID=Lus10008369.BGIv1.0 annot-version=v1.0 ATGGATGTGGATTCATCCATGGTCTCAGACGCCGATCAGGATACGACCGCACAAAACGTTTCGTCGTCTGCTGCGGCTAGGGAGAGGGAGCAACAGTTAA GTGAGGATCCACAGCCTGTCACAGCTTCATTGTCTCCTCCTCCTTCACCGCCGGCGCAGCAGTCCACACAGGACCAGGCCCAGGTGCAGCAACAGAGTAC CGTGGTGGGCCCGAGGCCGGCGCCAACGTACTCGGTTGTCAATGTTATTATAGAGAAGAAGGAAGATGGCCCAGGGTCCAGGTGTGGTCATACCTTGACT GCCGTGGCCGCTGTTGGCGAAGAGGGAACTCCTGGCTACATTGGTCCGAGGTTGATTTTGTTTGGTGGTGCCACTGGGCTCGAGGGAAATTCTGGCACCT CAACTCCTACGTCGGCTGGGGGTGCTGGCATCCGACTATCAGGGGCAACTGCTGATGTGCATTGTTATGATGTATTGACAAATAAATGGTCTAGGATTTC ACCTATTGGAGAACCACCTACTCCTAGGGCTGCTCATGTGGCAACTGCCGTGGGAACTATGGTAGTTATTCAGGGTGGCATTGGTCCAGCTGGTTTATCT GCTGAGGATCTTCATGTTCTCGACCTCACACAACAACGTCCACGATGGCATAGAGTTGTTGTTCAAGGCCCTGGTCCCGGGCCACGATATGGTCATGTGA TGGCATTGGTGGGTCAACGATTTCTCATGGCAATTGGAGGGAATGATGGTAAACGGCCTTTGTCTGATGTGTGGGCTCTTGACACAGCAGCCAAGCCTTA TGAATGGCGGAAGCTTGAGCCAGAAGGGGAAGGTCCACCACCGTGCATGTATGCCACTGCCAGTGCTCGCTCAGATGGTCTCCTATTGCTTTGTGGAGGA AGAGATGCTAACAGTGTGCCATTAGCAAGTGCATATGGGCTAGCTAAACATAGAGATGGCCGTTGGGAGTGGGCAATTGCTCCTGGTGTCTCTCCATCTT CTAGATACCAACATGCAGCTGTTTTTGTCAATGCAAGGCTTCATGTATCTGGAGGGGCACTTGGTGGGGGTCGCATGGTAGAGGATTCATCCAGTGTTGC AGTGCTGGATACTGCTGCTGGAGTGTGGTGTGATACGAAATCTGTTATTACTAGTCCAAGGACTGGCAGATACAGTGCTGATGCTGCTGGTGGAGATGCT GCTGTTGAGTTAACAAGGCGTTGCAGGCATGCTGCTGCTGCTGTTGGTGACTTGATATTCATTTATGGCGGGTTACGTGGTGGGGTGTTGCTTGATGACC TACTTGTTGCTGAAGATCTTGCTGCTGCTGAGACAACCAGTGCAGCTTCCCATGCTGCAGCTGCAGCAGCTTCTTCTAATGTACCGGGGATGAGAATGTC CGGTAGGTATGGGTTTATCGATGAAAGAAGTAGGAAAACAATACCTGATGCATCACCAGACGGTTCTGTCATCCTGGGTAACCCTGTTGCCCCTCCTGTA AATGGTGACATGTACACTGATATAAGCACAGAGAACACTATGCTTCCAGGATCTCGGAGAACAACCAAAGGTGTTGAATATTTGGTTGAAGCATCAGCAG CAGAAGCGGAGGCTATCACTGCAGCTTTAGCTGCTGCTAAAGCACGACAAGAGAATGGAGAAGTGGAACTGCCAGATAGGGAGCGTACTGCAGAGGCTAC TCCTAGTGGCAAACAGTTATCAACTATGATAAAACCTGATTCCACTGGTTCACATAGTATTCCCCCGACTGGAGTTCGTTTACATCACAGAGCGGTTGTT ATAGCTGCCGAGACTGGTGGAGCTTTAGGTGGCATGGTTAGACAGCTTTCAATTGATCAGTTTGAAAATGAAGGCAGGAGGGTAAGCTACGGGACACCTG AGAGTGCAACTGCAGCAAGGAAATTATTGGACAGACAGATGTCTATCAATAGTGTGCCTAAAAAGGTCATTGCCCATCTACTAAAGCCTCGTGGCTGGAA GCCCCTAGTTCGTCGGCAATTTTTCTTGGATTGCAATGAAATAGCAGATTTATGTGACAGCGCTGAAAGAATATTTTCTAGCGAGCCAAGTGTTTTGCAA CTTAGAGCTCCAATCAAAATATTTGGTGATTTGCATGGGCAATTTGGGGATCTCATGCGTCTTTTTGACGAATATGGTTCCCCTTCAACTGCCGGTGACA TTGCATACATCGATTATCTCTTCTTAGGAGATTATGTTGATCGTGGTCAACACAGTCTGGAGACCATTGCTCTCTTGCTTGCATTGAAGGTTGAATATCC CAACAATGTACATTTAATTCGTGGGAACCATGAGGCTGCTGATATCAATGCCCTTTTTGGCTTCCGGATCGAGTGCATTGAACGGATGGGTGAGAGGGAC GGAATCTGGGTTTGGCATCGGATCAATCGTTTGTTCAATTGGCTTCCATTGGCAGCATTGATAGAGAAGAAAATTATTTGTATGCATGGTGGTATAGGTC GCTCAATAAATCATGTGGAGCAGATTGAAAGCATTCAGCGTCCCATTACCATGGAAGCAGGCTCGATAGTTCTCATGGACCTATTATGGTCTGATCCAAC TGAAAATGACAGTGTGGAAGGATTGCGACCAAATGCAAGAGGCCCTGGGTTGGTGACTTTTGGGCCTGATAGGGTGATGGAGTTCTGCAATAACAATGAT CTTCAGTTGATAGTACGTGCACACGAATGTGTGATGGATGGCTTTGAACGTTTTGCGCAAGGGCACCTGATCACTCTTTTTTCTGCTACAAATTATTGTG GCACTGCAAATAATGCTGGCGCAATCCTGGTATTGGGAAGAGATCTTGTTGTAGTACCAAAACTTATCCATCCCTTACCACCAGCTATCTCTTCACCAGA GACTTCTCCTGAACGTCACATCGAAGATACATGGATGCAGGAGTTGAACGCTAACAGGCCTCCAACGCCAACTAGGGGACGTCCTCAAGCAGCAAACGAC AGAGGGTCTCTTGCTTGGATATAG
AA sequence Show only first row Show all	>Lus10008369 pacid=23145286 polypeptide=Lus10008369 locus=Lus10008369.g ID=Lus10008369.BGIv1.0 annot-version=v1.0 MDVDSSMVSDADQDTTAQNVSSSAAAREREQQLSEDPQPVTASLSPPPSPPAQQSTQDQAQVQQQSTVVGPRPAPTYSVVNVIIEKKEDGPGSRCGHTLT AVAAVGEEGTPGYIGPRLILFGGATGLEGNSGTSTPTSAGGAGIRLSGATADVHCYDVLTNKWSRISPIGEPPTPRAAHVATAVGTMVVIQGGIGPAGLS AEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRFLMAIGGNDGKRPLSDVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGG RDANSVPLASAYGLAKHRDGRWEWAIAPGVSPSSRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSVITSPRTGRYSADAAGGDA AVELTRRCRHAAAAVGDLIFIYGGLRGGVLLDDLLVAEDLAAAETTSAASHAAAAAASSNVPGMRMSGRYGFIDERSRKTIPDASPDGSVILGNPVAPPV NGDMYTDISTENTMLPGSRRTTKGVEYLVEASAAEAEAITAALAAAKARQENGEVELPDRERTAEATPSGKQLSTMIKPDSTGSHSIPPTGVRLHHRAVV IAAETGGALGGMVRQLSIDQFENEGRRVSYGTPESATAARKLLDRQMSINSVPKKVIAHLLKPRGWKPLVRRQFFLDCNEIADLCDSAERIFSSEPSVLQ LRAPIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETIALLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERD GIWVWHRINRLFNWLPLAALIEKKIICMHGGIGRSINHVEQIESIQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNND LQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPLPPAISSPETSPERHIEDTWMQELNANRPPTPTRGRPQAAND RGSLAWI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08420		BSL2	BRI1 suppressor 1 (BSU1)-like ...		Lus10008369 [exp]	0	1
AT5G65450		UBP17	ubiquitin-specific protease 17...		Lus10015894 [exp]	2.0	0.9584
AT5G07740			actin binding (.1)		Lus10015724 [exp]	2.0	0.9377
AT1G55350		EMB80, ATDEK1, ...	EMBRYO DEFECTIVE 80, embryo de...		Lus10010313 [exp]	2.8	0.9461
AT1G70060		SNL4	SIN3-like 4 (.1)		Lus10010729 [exp]	7.1	0.9383
AT5G04560		DME1, DME	DEMETER, HhH-GPD base excision...		Lus10014367 [exp]	7.4	0.9282
AT4G21670		FRY2, FLP1, ATC...	FIERY 2, C-terminal domain pho...		Lus10011195 [exp]	8.1	0.9136
AT1G72560		PSD	PAUSED, ARM repeat superfamily...		Lus10037671 [exp]	8.8	0.9259
AT1G70060		SNL4	SIN3-like 4 (.1)		Lus10029217 [exp]	9.6	0.9142
AT4G15840			BTB/POZ domain-containing prot...		Lus10037522 [exp]	12.6	0.9183
AT5G04560		DME1, DME	DEMETER, HhH-GPD base excision...		Lus10023864 [exp]	13.0	0.9308

Compare expression of checked genes

Lus10008369 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.