Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22040 210 / 5e-67 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000457 [exp] 468 / 3e-168 AT5G22040 204 / 1e-64 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G001700 [exp] 163 / 8e-49 AT5G22040 155 / 7e-46 unknown protein Potri.008G015500 [exp] 152 / 1e-44 AT5G22040 150 / 9e-44 unknown protein Potri.010G244600 [exp] 144 / 2e-41 AT5G22040 162 / 3e-48 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008373 pacid=23145288 polypeptide=Lus10008373 locus=Lus10008373.g ID=Lus10008373.BGIv1.0 annot-version=v1.0 ATGAGACGGCAAGGCCAATATGCCGATTCTGGTTCCACTGCTTATGGTGGTGCTCATATGCAGCATATTTCTAGTCAGAGGGTTGAACAGGAGTCTGATC AGTTCCGAGGACAACTGGAGGCCTTCACTCCTGAGAGAGAGACTTCATTTACTTCCTCAAAACCCGATGGGCAATGGCGGTGGGTGAGAGATGATCCAAA GGCGGTAAATTCCGTAGCAACCCAGATGTTCAATGAAGGTCAAGTAGTTGATGCCCCAAGGGCCTACTTTCAGGGGAAAAGGCCAGATTCCCAGATGCTG TTAGAGCAACAGGGGAACATTGATCCAAGATCCCGAACCCGTGAAGAAGATGGGCAGAGCTCCTATGAAGAAAAATCACATTTGCAGGGTTTTGAAGGCC TTGAGCAGAAATTCATTGACGATATCATGAAATTAGCCAAAGAACAGAGTGATGCTGAAGATTCAGAGATAGCTAGACATAAAGAGAAACTAAAATCCAT GAATGATCGGCATGAGGAACAACTAGCAGCACTTCGAGCAAGACATGCAAGTCGTAGAGAAGAAGTGCTTCGGAAAGAATCGCAAGCACGTCAACAGCGA TATCAGAAGGCAGTCAGAGATCTTTACGGAGGCATTAAGAGCATGGCCCCTGGAGAGTGCCTTGGTTATAGTGCACGTGCAGGTTCAGCTCCTATGAATG AAGCTCAGCAAGCTTACAAGGCCAGCCATTTCGAGTCTTACCAGGAGCAGGCTCGATACCTTGGAAACATCAGGGATCAGGGATTTGAACCACGAGACTC ATATCCTCCTGGTGGAGGACGCGTATATGATACAACTGCACGCTATCGTTGA
AA sequence Show only first row Show all	>Lus10008373 pacid=23145288 polypeptide=Lus10008373 locus=Lus10008373.g ID=Lus10008373.BGIv1.0 annot-version=v1.0 MRRQGQYADSGSTAYGGAHMQHISSQRVEQESDQFRGQLEAFTPERETSFTSSKPDGQWRWVRDDPKAVNSVATQMFNEGQVVDAPRAYFQGKRPDSQML LEQQGNIDPRSRTREEDGQSSYEEKSHLQGFEGLEQKFIDDIMKLAKEQSDAEDSEIARHKEKLKSMNDRHEEQLAALRARHASRREEVLRKESQARQQR YQKAVRDLYGGIKSMAPGECLGYSARAGSAPMNEAQQAYKASHFESYQEQARYLGNIRDQGFEPRDSYPPGGGRVYDTTARYR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22040			unknown protein		Lus10008373 [exp]	0	1
AT1G11480			eukaryotic translation initiat...		Lus10039708 [exp]	1.0	0.9445
AT5G37370		ATSRL1	PRP38 family protein (.1.2.3.4...		Lus10031361 [exp]	2.4	0.9325
AT5G20350		TIP1	TIP GROWTH DEFECTIVE 1, Ankyri...		Lus10008037 [exp]	4.0	0.9060
AT5G20350		TIP1	TIP GROWTH DEFECTIVE 1, Ankyri...		Lus10038108 [exp]	8.9	0.9027
AT3G59990		MAP2B	methionine aminopeptidase 2B (...		Lus10005292 [exp]	8.9	0.8972
AT1G03910			unknown protein		Lus10021530 [exp]	11.0	0.9338
AT1G04300			TRAF-like superfamily protein ...		Lus10021218 [exp]	13.6	0.8874
AT1G04300			TRAF-like superfamily protein ...		Lus10022208 [exp]	17.3	0.8936
AT3G19080			SWIB complex BAF60b domain-con...		Lus10009333 [exp]	18.1	0.9202
AT2G34830	WRKY	ATWRKY35, WRKY3...	maternal effect embryo arrest ...		Lus10038426 [exp]	18.5	0.9123

Compare expression of checked genes

Lus10008373 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.