Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16560 513 / 1e-179 Protein phosphatase 2C family protein (.1) AT3G09400 222 / 6e-65 PLL3 pol-like 3 (.1.2) AT5G02400 222 / 1e-64 PLL2 pol-like 2 (.1) AT1G07630 219 / 7e-64 PLL5 pol-like 5 (.1) AT2G28890 215 / 3e-62 PLL4 poltergeist like 4 (.1) AT2G46920 167 / 2e-44 POL poltergeist, Protein phosphatase 2C family protein (.1.2) AT2G35350 166 / 4e-44 PLL1 poltergeist like 1 (.1) AT3G55050 121 / 4e-30 Protein phosphatase 2C family protein (.1.2) AT3G12620 119 / 2e-29 Protein phosphatase 2C family protein (.1.2) AT4G38520 116 / 2e-28 Protein phosphatase 2C family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004793 [exp] 861 / 0 AT3G16560 613 / 0.0 Protein phosphatase 2C family protein (.1) Lus10024397 [exp] 230 / 3e-68 AT1G07630 674 / 0.0 pol-like 5 (.1) Lus10025348 [exp] 227 / 4e-67 AT1G07630 682 / 0.0 pol-like 5 (.1) Lus10040823 [exp] 177 / 4e-48 AT1G07630 869 / 0.0 pol-like 5 (.1) Lus10016555 [exp] 176 / 9e-48 AT1G07630 868 / 0.0 pol-like 5 (.1) Lus10000896 [exp] 174 / 6e-47 AT2G35350 516 / 3e-173 poltergeist like 1 (.1) Lus10004554 [exp] 173 / 2e-46 AT2G35350 512 / 3e-170 poltergeist like 1 (.1) Lus10015047 [exp] 131 / 9e-34 AT3G55050 476 / 7e-169 Protein phosphatase 2C family protein (.1.2) Lus10003993 [exp] 129 / 4e-33 AT3G12620 483 / 1e-171 Protein phosphatase 2C family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G207700 [exp] 612 / 0 AT3G16560 530 / 0.0 Protein phosphatase 2C family protein (.1) Potri.010G024800 [exp] 596 / 0 AT3G16560 502 / 5e-175 Protein phosphatase 2C family protein (.1) Potri.003G159600 [exp] 453 / 1e-155 AT3G16560 476 / 7e-165 Protein phosphatase 2C family protein (.1) Potri.006G085000 [exp] 223 / 5e-65 AT1G07630 661 / 0.0 pol-like 5 (.1) Potri.001G144700 [exp] 186 / 3e-51 AT2G35350 768 / 0.0 poltergeist like 1 (.1) Potri.003G089500 [exp] 184 / 2e-50 AT2G35350 764 / 0.0 poltergeist like 1 (.1) Potri.009G030600 [exp] 173 / 1e-46 AT1G07630 884 / 0.0 pol-like 5 (.1) Potri.014G110500 [exp] 172 / 5e-46 AT2G46920 1092 / 0.0 poltergeist, Protein phosphatase 2C family protein (.1.2) Potri.002G185000 [exp] 171 / 2e-45 AT2G46920 1092 / 0.0 poltergeist, Protein phosphatase 2C family protein (.1.2) Potri.001G239300 [exp] 169 / 3e-45 AT2G28890 862 / 0.0 poltergeist like 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10008378 pacid=23145294 polypeptide=Lus10008378 locus=Lus10008378.g ID=Lus10008378.BGIv1.0 annot-version=v1.0 ATGCGAGGATCAAGCACTATACATAGTGAAGGTGAGTTGAAGGTCAGCTTTGGCTATCAATGCAATGGCAATGGAGCGAGCTCTTGTTGGGTTTCAAATG AGTACGAAGAAGCTCTTAAAGAACCTAACCTCCAAAGGAACAGCAGTTTCTCTTGTTTATCTGGTGCTGCCTTAAGTGCTAATGCCACATTGGCTAACAC AAACATGTGCAATGGAGTAATAGGGGCTGAGATTCTTCCCAGTTGGGACTCCCCAAATTCGTTTCGAAGGATACCCTCATCAACTTCAGTTTCTAAGCTG GACATACTGTCATCTTCTCTTCCAGGCAGCAGCTCAAACTTGAGCTGCAGTCCATCTTCTCCTAGCTCGCTTGACTATGATTCCTATTCTTTGAATTCGA TGAGTGCTCCTTCAAAATCTGAAGGCTTTCTCAATGCCATGGAAGTCCAAGTGGCTGGTGGAGCTGCTGGTGAGGACAGAGTTCAAGCTGTTTGTTCTGA AGAAAATGGCTGGTTATTTTGTGCTATCTATGATGGATTCAATGGAAGAGATGCTGCTGACTTTCTGGCTGGAACATTGTATGAATCCATCATATTCCAT ACCAACTCGTTAGATTGGGATTCAAACCAGGATATCGTCAAGGCTCCCGGTTACGCTTGTCCTAATTCTTTCCTCCAATGTGGTCCAGGAGCTTATGATT CAAGCATGAGTAGTGTCAACTCCTTTAGGTACAAGGTATTGGATAGCCTACAACGTGCAGTTGGTAAGGCTGAAAATGATTTCTTATACATGGTAGAGCA TGAGATGGAGGATAGGCCTGATCTTGTTTCAGTAGGATGTTGTGTGCTGGTTGTTCTTCTACATGGGATGGATTTGTATACCTTGAACTTAGGTGACAGC AGAGCAGTATTGGCATCATATGATGAAGAAGGAAATGTGGCAAATGGACGTAGAAAGCGTTTGAAGGCTGTTCAGCTCAGTGATAGCCACACTGTAGACA ATGAACTTGAAAGGACTAGACTAGTTGGTGAGCATCCAGATGATCCTGCGACTATAGTTGGAGGAAAAGTCAAGGGAAAACTCAAGGTTACTCGAGCTTT CGGTGTTGGTTACTTGAAAAAGAAGAAGTTGAACGATGCACTAATGGGTATCCTCCGGGTGAGAAACCTAATAAGTCCACCATATGTATCCACAGAACCA TCTCTGAACGTGCACAGAATATCAAAATCTGATCACTTTGTGATAGTAGCAAGCGACGGCCTTTTTGATTTCTTCAGCAATGAGGAGACAGTAGAGCTTG TCCATTCTTACATGCTGAGCAACCCACATGGTGACCCAGCAAAGTTTCTGTTAGAGCATCTTGTCAAGAGAGCTGCTTCTTGTGCAGGTTTTAGCATGGA GGAATTGATGAACATACCAGCTGGTAGGAGGAGAAAATACCATGATGATGTTACTGTAATTGTGATCATCCTTGGAACAAATCACAGAACTTTGAAGGCA TCAACATTTGTATAA
AA sequence Show only first row Show all	>Lus10008378 pacid=23145294 polypeptide=Lus10008378 locus=Lus10008378.g ID=Lus10008378.BGIv1.0 annot-version=v1.0 MRGSSTIHSEGELKVSFGYQCNGNGASSCWVSNEYEEALKEPNLQRNSSFSCLSGAALSANATLANTNMCNGVIGAEILPSWDSPNSFRRIPSSTSVSKL DILSSSLPGSSSNLSCSPSSPSSLDYDSYSLNSMSAPSKSEGFLNAMEVQVAGGAAGEDRVQAVCSEENGWLFCAIYDGFNGRDAADFLAGTLYESIIFH TNSLDWDSNQDIVKAPGYACPNSFLQCGPGAYDSSMSSVNSFRYKVLDSLQRAVGKAENDFLYMVEHEMEDRPDLVSVGCCVLVVLLHGMDLYTLNLGDS RAVLASYDEEGNVANGRRKRLKAVQLSDSHTVDNELERTRLVGEHPDDPATIVGGKVKGKLKVTRAFGVGYLKKKKLNDALMGILRVRNLISPPYVSTEP SLNVHRISKSDHFVIVASDGLFDFFSNEETVELVHSYMLSNPHGDPAKFLLEHLVKRAASCAGFSMEELMNIPAGRRRKYHDDVTVIVIILGTNHRTLKA STFV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16560			Protein phosphatase 2C family ...		Lus10008378 [exp]	0	1
AT3G18290		BTS, EMB2454	embryo defective 2454, BRUTUS,...		Lus10005111 [exp]	5.5	0.7665
AT2G36670			Eukaryotic aspartyl protease f...		Lus10014391 [exp]	11.0	0.6865
AT4G00710		BSK3	BR-signaling kinase 3 (.1)		Lus10000806 [exp]	16.4	0.7007
AT3G16560			Protein phosphatase 2C family ...		Lus10004793 [exp]	16.9	0.7111
AT4G11740		SAY1	Ubiquitin-like superfamily pro...		Lus10041365 [exp]	21.6	0.7591
AT4G24200			Transcription elongation facto...		Lus10009128 [exp]	22.1	0.7562
AT1G21640		ATNADK2, NADK2,...	NAD kinase 2 (.1.2)		Lus10028677 [exp]	27.7	0.6797
AT5G52660	MYB		Homeodomain-like superfamily p...		Lus10039284 [exp]	28.7	0.7407
AT5G50210		SUFE3, OLD5, QS	SULFUR E 3, ONSET OF LEAF DEAT...		Lus10019464 [exp]	30.6	0.6804
AT5G03770		AtKdtA, KDTA	KDO transferase A (.1)		Lus10017664 [exp]	31.5	0.6967

Compare expression of checked genes

Lus10008378 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.