Plant FIBer expression Database

Lus10008379 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003146
[exp]
51 / 2e-07 AT3G25160 388 / 2e-137 ER lumen protein retaining receptor family protein (.1)
Lus10041260
[exp]
42 / 0.0003 AT4G14210 951 / 0.0 PIGMENT DEFECTIVE 226, phytoene desaturase 3 (.1.2)
Lus10021967
[exp]
42 / 0.0003 AT4G14210 952 / 0.0 PIGMENT DEFECTIVE 226, phytoene desaturase 3 (.1.2)
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10008379 pacid=23145287 polypeptide=Lus10008379 locus=Lus10008379.g ID=Lus10008379.BGIv1.0 annot-version=v1.0
ATGGTTGTGATGCCAAACAGAAACTTCATCGCCACTAGCGTCAGAACCGCAATCGCGTTCATCCTCGTCGACTGCCGGCTGATCCACCCGACCACCGCCT
TCATCGTCGGCGCGATGACCCTCTGCCCCTATAGTGTCCTCTTCGAACCCATTGAACAAGGAAGATGCAGAATTTCTCTTTACGCAATTGGAATCCCAAG
GAGGGATCCAATCCATGTTAATCGAGACATTGATTACTTTGTACTGGATTACCACCGTCTCCACCTTCAACTTCAGTCGTCAGGTGAAAGTGAAACTCAC
GATCACCTCAACCAATCCCTTGTGACTCTCAAATTCCATTCCTTCACTCAATTGTGTAACAGAAGACTGAGACATCATTCCACTCCCTCCAAGATGGTTT
CTGCTGTCAATTCTGAAACTTTGTTTTTTAAAAACTATTGGACTACAGTGACAATTGGAATGAGGACCTGGACGTTGCCGCCGGTGTGTTCGGGTGATAA
GGTGGGGTCGGGACGAAGTAACGGGTCTATTGATCTTGATTTGTGTGAGATCCAGCTGCCTCTGATGGAACATATGCATGGAAAAGGAAGGTCAAGGTCA
GGCGGTGTTGGTGTGGGGGAATCCGAGCCGACGCCTTTATCTCTTGGCCACTCGGTTTACCCGGGTCTTAGCTTCGATGTGAAGGATGGGTTGTTTTGGA
CAATAGTCAAATGGAGTTGTAGGGTTGGGCTTTACTTTAAATATGGGCCCATCCGTGCCTAG
AA sequence
>Lus10008379 pacid=23145287 polypeptide=Lus10008379 locus=Lus10008379.g ID=Lus10008379.BGIv1.0 annot-version=v1.0
MVVMPNRNFIATSVRTAIAFILVDCRLIHPTTAFIVGAMTLCPYSVLFEPIEQGRCRISLYAIGIPRRDPIHVNRDIDYFVLDYHRLHLQLQSSGESETH
DHLNQSLVTLKFHSFTQLCNRRLRHHSTPSKMVSAVNSETLFFKNYWTTVTIGMRTWTLPPVCSGDKVGSGRSNGSIDLDLCEIQLPLMEHMHGKGRSRS
GGVGVGESEPTPLSLGHSVYPGLSFDVKDGLFWTIVKWSCRVGLYFKYGPIRA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10008379
[exp]
0 1
AT1G70530 CRK3 cysteine-rich RLK (RECEPTOR-li... Lus10003724
[exp]
1.7 0.8899
AT5G43860 ATCLH2 ARABIDOPSIS THALIANA CHLOROPHY... Lus10039372
[exp]
5.1 0.8958
AT2G15220 Plant basic secretory protein ... Lus10026580
[exp]
7.0 0.8720
AT1G07010 AtSLP1 Shewenella-like protein phosph... Lus10031854
[exp]
8.4 0.8471
AT5G46530 AWPM-19-like family protein (.... Lus10004587
[exp]
11.7 0.8915
AT5G14410 unknown protein Lus10022295
[exp]
13.7 0.8236
AT1G65230 Uncharacterized conserved prot... Lus10027002
[exp]
19.0 0.8749
AT1G11090 alpha/beta-Hydrolases superfam... Lus10011212
[exp]
20.4 0.8542
AT3G50140 Plant protein of unknown funct... Lus10037762
[exp]
21.4 0.8405
AT2G30540 Thioredoxin superfamily protei... Lus10040899
[exp]
22.3 0.8739

Lus10008379 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.