Plant FIBer expression Database

Lus10008380 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G15790 109 / 1e-30 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004794
[exp]
65 / 4e-14 AT4G15790 62 / 2e-13 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G024600
[exp]
131 / 3e-39 AT4G15790 152 / 3e-48 unknown protein
Potri.008G207500
[exp]
118 / 3e-34 AT4G15790 147 / 2e-46 unknown protein
PFAM info
Representative CDS sequence
>Lus10008380 pacid=23145285 polypeptide=Lus10008380 locus=Lus10008380.g ID=Lus10008380.BGIv1.0 annot-version=v1.0
ATGGCCGACACGGACGCCTCCTCCGCTACTGTTCTGCCTCCGGCTCCCGCTCCTCTAGCTCCGGTCTGCTTCTCTTCCCCTTGCCCTAGAATAAGCTTGT
CAATCGTAGCGGATTCTTCCGTCGCCGGCAGCACTACATTGCGATTCATAAGCTCGCAATTTGACCTTTTCGCTTTTGCTGCTGCTTTTTCTTTCCAGGA
ATTAAACGAATCGAGGACAGAGCTTCATACCAGAATCCAGGGCTTGAAACAGGACTTGCAAAGTTGGAGATCAAAGTTGGATACTCAAGTCAATATCTAC
CGTGAGGAGCTGATCGACTTGAAGAAGTCGTTAAATGATGAAGTGGAGCAACTTCGTACGGAATTTCAAGAACTTAGGACCACACTGCAGCAGCAGCAAG
ATGATATATCTTCAAGCCTTAAAAATTTGGGGCCGCTAGATGCGGCAGTGGAGGAGTCTAAAGGAGCTAAGGCTCCCGAGGTAAATGTGGAACATGAAGA
ATCAACGGCCTCAGAGGATGAAAATTTTGCCAACTCTCACGACTGA
AA sequence
>Lus10008380 pacid=23145285 polypeptide=Lus10008380 locus=Lus10008380.g ID=Lus10008380.BGIv1.0 annot-version=v1.0
MADTDASSATVLPPAPAPLAPVCFSSPCPRISLSIVADSSVAGSTTLRFISSQFDLFAFAAAFSFQELNESRTELHTRIQGLKQDLQSWRSKLDTQVNIY
REELIDLKKSLNDEVEQLRTEFQELRTTLQQQQDDISSSLKNLGPLDAAVEESKGAKAPEVNVEHEESTASEDENFANSHD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G15790 unknown protein Lus10008380
[exp]
0 1
AT1G54990 RGR1, AXR4 REDUCED ROOT GRAVITROPISM 1, R... Lus10004478
[exp]
7.9 0.8238
AT5G39760 ZF_HD ATHB23, ZHD10 ZINC FINGER HOMEODOMAIN 10, ho... Lus10005242
[exp]
8.2 0.8270
AT3G09070 Protein of unknown function (D... Lus10027785
[exp]
8.4 0.8307
AT5G38110 SGA1, SGA01, AS... anti- silencing function 1b (.... Lus10033579
[exp]
8.9 0.8224
AT1G18650 PDCB3 plasmodesmata callose-binding ... Lus10036914
[exp]
9.5 0.8248
AT5G23570 SGS3, ATSGS3 SUPPRESSOR OF GENE SILENCING 3... Lus10019214
[exp]
12.8 0.8300
AT5G39760 ZF_HD ATHB23, ZHD10 ZINC FINGER HOMEODOMAIN 10, ho... Lus10005244
[exp]
14.5 0.8105
AT5G25510 Protein phosphatase 2A regulat... Lus10008104
[exp]
14.5 0.8257
AT1G47200 WPP2 WPP domain protein 2 (.1) Lus10042643
[exp]
15.7 0.8336
AT3G07640 unknown protein Lus10036423
[exp]
17.2 0.7497

Lus10008380 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.