Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47810 133 / 2e-41 CCAAT NF-YB5 "nuclear factor Y, subunit B5", nuclear factor Y, subunit B5 (.1) AT2G38880 125 / 2e-38 CCAAT ATNF-YB1, ATHAP3, HAP3A "nuclear factor Y, subunit B1", HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 3A, HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 3, NUCLEAR FACTOR Y SUBUNIT B1, HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 3, nuclear factor Y, subunit B1 (.1.2.3.4.5.6.7.8) AT4G14540 125 / 3e-38 CCAAT NF-YB3 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) AT5G47640 125 / 1e-37 CCAAT NF-YB2, HAP3b "nuclear factor Y, subunit B2", nuclear factor Y, subunit B2 (.1) AT3G53340 123 / 3e-37 CCAAT NF-YB10 "nuclear factor Y, subunit B10", nuclear factor Y, subunit B10 (.1) AT2G37060 122 / 1e-36 CCAAT NF-YB8 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) AT2G13570 117 / 3e-34 CCAAT NF-YB7 "nuclear factor Y, subunit B7", nuclear factor Y, subunit B7 (.1) AT1G09030 113 / 1e-33 CCAAT NF-YB4 "nuclear factor Y, subunit B4", nuclear factor Y, subunit B4 (.1) AT5G47670 108 / 6e-31 CCAAT NF-YB6, L1L "nuclear factor Y, subunit B6", LEC1-LIKE, nuclear factor Y, subunit B6 (.1.2) AT1G21970 108 / 1e-30 CCAAT AtLEC1, NF-YB9, EMB212, LEC1 NUCLEAR FACTOR Y, SUBUNIT B9, LEAFY COTYLEDON 1, EMBRYO DEFECTIVE 212, Histone superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004796 [exp] 202 / 1e-68 AT2G47810 152 / 4e-48 "nuclear factor Y, subunit B5", nuclear factor Y, subunit B5 (.1) Lus10036575 [exp] 140 / 6e-44 AT2G47810 177 / 2e-57 "nuclear factor Y, subunit B5", nuclear factor Y, subunit B5 (.1) Lus10041355 [exp] 139 / 1e-43 AT2G47810 176 / 7e-57 "nuclear factor Y, subunit B5", nuclear factor Y, subunit B5 (.1) Lus10029908 [exp] 122 / 7e-37 AT1G09030 179 / 7e-59 "nuclear factor Y, subunit B4", nuclear factor Y, subunit B4 (.1) Lus10020899 [exp] 124 / 8e-37 AT2G13570 213 / 9e-70 "nuclear factor Y, subunit B7", nuclear factor Y, subunit B7 (.1) Lus10033477 [exp] 124 / 1e-36 AT2G13570 211 / 4e-69 "nuclear factor Y, subunit B7", nuclear factor Y, subunit B7 (.1) Lus10016616 [exp] 123 / 1e-36 AT4G14540 215 / 5e-72 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Lus10022514 [exp] 122 / 1e-36 AT4G14540 219 / 2e-73 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Lus10004493 [exp] 119 / 7e-36 AT1G09030 180 / 2e-59 "nuclear factor Y, subunit B4", nuclear factor Y, subunit B4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G210300 [exp] 152 / 1e-48 AT2G47810 176 / 1e-57 "nuclear factor Y, subunit B5", nuclear factor Y, subunit B5 (.1) Potri.014G132600 [exp] 142 / 1e-44 AT2G47810 186 / 9e-61 "nuclear factor Y, subunit B5", nuclear factor Y, subunit B5 (.1) Potri.013G019600 [exp] 133 / 2e-41 AT1G09030 171 / 9e-56 "nuclear factor Y, subunit B4", nuclear factor Y, subunit B4 (.1) Potri.016G085000 [exp] 125 / 6e-38 AT3G53340 247 / 1e-84 "nuclear factor Y, subunit B10", nuclear factor Y, subunit B10 (.1) Potri.016G006100 [exp] 124 / 2e-37 AT4G14540 212 / 8e-71 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.008G044800 [exp] 124 / 2e-37 AT2G37060 245 / 3e-84 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) Potri.010G216600 [exp] 124 / 2e-37 AT2G37060 236 / 2e-80 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) Potri.006G005500 [exp] 124 / 3e-37 AT4G14540 208 / 2e-69 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.001G367500 [exp] 122 / 1e-36 AT4G14540 210 / 2e-70 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.005G027400 [exp] 121 / 1e-36 AT1G09030 175 / 3e-57 "nuclear factor Y, subunit B4", nuclear factor Y, subunit B4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [flax] [poplar] Histone PF00808 [flax] [poplar] CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Representative CDS sequence Show only first row Show all	>Lus10008383 pacid=23145276 polypeptide=Lus10008383 locus=Lus10008383.g ID=Lus10008383.BGIv1.0 annot-version=v1.0 ATGAAACAGATCCTACCGCCCAACGCCAAGATTTCCAAAGAAGCCAAAGAGACTATGCAGGACTGCGTGTCTGAGTTCATCAGCTTCGTCACCAGCGAGG CTTCTGAGGAGAAGTGCAGGAAGGAACGCCGTAAGACTCTCAACGGTGACGATATCTGTTGGGCCATGGGCTCTCTTGGTTTCGACGACTACGCTCTTCC TCTACGACGCTTCTTGCAGCGTTATAGGGAAGTTGAAGGGGACAGTAGATCAGCCACCGGGAATTTCGATGACACCGCCGGCGCCCCACACCCGCAACAC CCTTAA
AA sequence Show only first row Show all	>Lus10008383 pacid=23145276 polypeptide=Lus10008383 locus=Lus10008383.g ID=Lus10008383.BGIv1.0 annot-version=v1.0 MKQILPPNAKISKEAKETMQDCVSEFISFVTSEASEEKCRKERRKTLNGDDICWAMGSLGFDDYALPLRRFLQRYREVEGDSRSATGNFDDTAGAPHPQH P

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47810	CCAAT	NF-YB5	"nuclear factor Y, subunit B5"...		Lus10008383 [exp]	0	1
AT1G52540			Protein kinase superfamily pro...		Lus10031673 [exp]	9.8	0.8104
AT3G58190	AS2	LBD29, ASL16	ASYMMETRIC LEAVES 2-LIKE 16, l...		Lus10000613 [exp]	12.4	0.8165
AT5G16770	MYB	ATMYB9	myb domain protein 9 (.1.2)		Lus10011031 [exp]	14.7	0.7919
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10029182 [exp]	18.4	0.7481
AT3G50930		BCS1	cytochrome BC1 synthesis (.1)		Lus10037004 [exp]	19.3	0.7534
AT3G07840			Pectin lyase-like superfamily ...		Lus10003001 [exp]	19.4	0.8067
					Lus10029825 [exp]	19.8	0.8008
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Lus10021136 [exp]	24.5	0.7632
AT1G64870			unknown protein		Lus10041678 [exp]	26.1	0.7674
AT3G60820		PBF1	N-terminal nucleophile aminohy...		Lus10030272 [exp]	28.1	0.7338

Compare expression of checked genes

Lus10008383 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.