Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13898 75 / 3e-18 unknown protein AT5G10310 63 / 2e-13 unknown protein AT4G37810 61 / 2e-12 unknown protein AT2G30370 53 / 2e-09 EPFL6, CHAL EPF1-like 6, CHALLAH, allergen-related (.1.2) AT3G22820 50 / 1e-08 EPFL5, CLL1 epidermal patterning factor like 5, CHALLAH-LIKE 1, allergen-related (.1) AT4G14723 50 / 1e-08 EPFL4, CLL2 epidermal patterning factor like 4, CHALLAH-LIKE 2, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006016 [exp] 183 / 1e-58 AT3G13898 76 / 4e-17 unknown protein Lus10035922 [exp] 62 / 2e-13 AT5G10310 100 / 2e-28 unknown protein Lus10025740 [exp] 62 / 3e-13 AT5G10310 100 / 2e-28 unknown protein Lus10011591 [exp] 59 / 7e-12 AT4G37810 102 / 6e-29 unknown protein Lus10021901 [exp] 55 / 2e-10 AT4G14723 104 / 2e-30 epidermal patterning factor like 4, CHALLAH-LIKE 2, unknown protein Lus10041186 [exp] 53 / 7e-10 AT4G14723 106 / 5e-31 epidermal patterning factor like 4, CHALLAH-LIKE 2, unknown protein Lus10006616 [exp] 48 / 3e-08 AT4G14723 99 / 5e-29 epidermal patterning factor like 4, CHALLAH-LIKE 2, unknown protein Lus10024189 [exp] 47 / 3e-07 ND 107 / 4e-31 Lus10019254 [exp] 46 / 3e-07 AT4G37810 74 / 5e-18 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G042300 [exp] 115 / 1e-33 AT3G13898 80 / 4e-20 unknown protein Potri.007G095400 [exp] 65 / 3e-14 AT5G10310 105 / 2e-30 unknown protein Potri.002G112900 [exp] 61 / 1e-12 AT4G37810 90 / 9e-24 unknown protein Potri.005G073700 [exp] 61 / 2e-12 AT5G10310 102 / 7e-29 unknown protein Potri.008G157300 [exp] 52 / 4e-09 AT4G14723 69 / 4e-16 epidermal patterning factor like 4, CHALLAH-LIKE 2, unknown protein Potri.013G155500 [exp] 49 / 3e-08 AT2G30370 93 / 7e-25 EPF1-like 6, CHALLAH, allergen-related (.1.2) Potri.019G128200 [exp] 45 / 1e-06 AT2G30370 110 / 7e-32 EPF1-like 6, CHALLAH, allergen-related (.1.2) Potri.010G082200 [exp] 44 / 2e-06 AT4G14723 71 / 1e-16 epidermal patterning factor like 4, CHALLAH-LIKE 2, unknown protein Potri.018G130700 [exp] 40 / 8e-05 AT1G80133 62 / 1e-13 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008387 pacid=23152635 polypeptide=Lus10008387 locus=Lus10008387.g ID=Lus10008387.BGIv1.0 annot-version=v1.0 ATGGTCGATGCTAGACCCATTTCTTGCTCTCTTCTTCTATTATTACTTCTTCTCCATGTCAACTTGGCTTTCGCCACTAGTCGGCCGTTTCCACCAAATC ATGCTTCTGCTACAGTGAATCAACCATTGATTAGCCAGAGCCCGATTCAGCAAGCAGCAGAATCTGGAACCCATTTGAGCTCAACTCAGGAGGGGAGACA GAAAGAAGCTGCCTTTTTCTCAAAAGAGTACGGGAAATTGGGGTCAAGTCCACCGAGCTGTGAACGAAAGTGCTATGGATGTTCTCCATGTGAAGCAATT CAGGTGCCTACAACCAGCAGAAGACATAGCAGCCATGTCCTGAGGCTGAACTACGCCGACTATAAGCCTGAGGGTTGGAAATGCAAATGTGGCCCTTCTT TTTACAGCCCCTGA
AA sequence Show only first row Show all	>Lus10008387 pacid=23152635 polypeptide=Lus10008387 locus=Lus10008387.g ID=Lus10008387.BGIv1.0 annot-version=v1.0 MVDARPISCSLLLLLLLLHVNLAFATSRPFPPNHASATVNQPLISQSPIQQAAESGTHLSSTQEGRQKEAAFFSKEYGKLGSSPPSCERKCYGCSPCEAI QVPTTSRRHSSHVLRLNYADYKPEGWKCKCGPSFYSP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13898			unknown protein		Lus10008387 [exp]	0	1
AT3G15790		MBD11, ATMBD11	methyl-CPG-binding domain 11 (...		Lus10002168 [exp]	8.7	0.9174
AT3G18960	B3		AP2/B3-like transcriptional fa...		Lus10012046 [exp]	11.7	0.9428
AT4G15620			Uncharacterised protein family...		Lus10012562 [exp]	14.7	0.9036
AT5G48170		SNE, SLY2	SNEEZY, SLEEPY2, F-box family ...		Lus10001172 [exp]	15.5	0.9204
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10032098 [exp]	15.7	0.9332
					Lus10006316 [exp]	15.9	0.8926
AT3G52680			F-box/RNI-like/FBD-like domain...		Lus10029997 [exp]	17.0	0.8780
AT1G31310	Trihelix		hydroxyproline-rich glycoprote...		Lus10040629 [exp]	17.1	0.9378
AT5G61190	C2H2ZnF		putative endonuclease or glyco...		Lus10003476 [exp]	17.3	0.9188
AT2G27550		ATC	centroradialis (.1)		Lus10004884 [exp]	17.9	0.8693

Compare expression of checked genes

Lus10008387 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.