Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72690 64 / 7e-15 unknown protein AT1G17490 54 / 6e-11 unknown protein AT5G57000 52 / 2e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006016 [exp] 126 / 3e-37 AT3G13898 76 / 4e-17 unknown protein Lus10006884 [exp] 67 / 4e-15 AT5G57000 85 / 2e-21 unknown protein Lus10015607 [exp] 66 / 5e-15 AT1G72690 84 / 6e-21 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G119600 [exp] 65 / 4e-15 AT1G72690 91 / 2e-25 unknown protein Potri.004G095300 [exp] 62 / 5e-14 AT1G72690 57 / 3e-12 unknown protein Potri.006G148000 [exp] 63 / 7e-14 AT5G57000 83 / 2e-20 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008389 pacid=23152648 polypeptide=Lus10008389 locus=Lus10008389.g ID=Lus10008389.BGIv1.0 annot-version=v1.0 ATGGCGGAAACGACACAGAAGACATCACATTCTGAAACAGGTACCGAAGAGAAGCATCGAAAGCCTATAAATGTTATTGAGCAGCAGGTGATGGGACAAG TTGACAAGGAAAAGGAGCATAAACATGATGAGGAGACGCACGGAACAAGCGATGACATTGATACGTCCACCTCCATTGAAGAAGTCAAAGGACCAGGTGT GTTTCAGAGGGCAAAGGAAGAGGTTGAAGCCCTTGTTGAAACAATTCGTCCCAACAAGGACTAA
AA sequence Show only first row Show all	>Lus10008389 pacid=23152648 polypeptide=Lus10008389 locus=Lus10008389.g ID=Lus10008389.BGIv1.0 annot-version=v1.0 MAETTQKTSHSETGTEEKHRKPINVIEQQVMGQVDKEKEHKHDEETHGTSDDIDTSTSIEEVKGPGVFQRAKEEVEALVETIRPNKD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72690			unknown protein		Lus10008389 [exp]	0	1
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10040736 [exp]	2.4	0.9130
AT1G29510		SAUR68	SMALL AUXIN UPREGULATED 68, SA...		Lus10020439 [exp]	7.7	0.8714
AT4G30845			unknown protein		Lus10002320 [exp]	10.8	0.8509
AT5G16660			unknown protein		Lus10026866 [exp]	10.9	0.8527
AT2G30695			unknown protein		Lus10008363 [exp]	11.6	0.8926
AT3G47650			DnaJ/Hsp40 cysteine-rich domai...		Lus10002020 [exp]	19.0	0.8555
AT1G49975			unknown protein		Lus10033771 [exp]	19.6	0.8778
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10003521 [exp]	24.0	0.8232
AT5G59750			DHBP synthase RibB-like alpha/...		Lus10040865 [exp]	28.6	0.7654
AT4G39710		PnsL4, FKBP16-2	Photosynthetic NDH subcomplex...		Lus10000197 [exp]	33.0	0.8533

Compare expression of checked genes

Lus10008389 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.