Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72880 477 / 5e-169 Survival protein SurE-like phosphatase/nucleotidase (.1.2) AT4G14930 194 / 3e-59 Survival protein SurE-like phosphatase/nucleotidase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015610 [exp] 562 / 0 AT1G72880 522 / 0.0 Survival protein SurE-like phosphatase/nucleotidase (.1.2) Lus10037627 [exp] 549 / 0 AT1G72880 508 / 0.0 Survival protein SurE-like phosphatase/nucleotidase (.1.2) Lus10004909 [exp] 199 / 5e-61 AT4G14930 387 / 1e-135 Survival protein SurE-like phosphatase/nucleotidase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G196800 [exp] 498 / 2e-177 AT1G72880 473 / 3e-167 Survival protein SurE-like phosphatase/nucleotidase (.1.2) Potri.003G041000 [exp] 488 / 2e-173 AT1G72880 480 / 4e-170 Survival protein SurE-like phosphatase/nucleotidase (.1.2) Potri.010G088000 [exp] 212 / 3e-66 AT4G14930 365 / 4e-127 Survival protein SurE-like phosphatase/nucleotidase (.1) Potri.010G088100 [exp] 204 / 3e-63 AT4G14930 355 / 5e-123 Survival protein SurE-like phosphatase/nucleotidase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01975 [flax] [poplar] SurE Survival protein SurE
Representative CDS sequence Show only first row Show all	>Lus10008390 pacid=23152645 polypeptide=Lus10008390 locus=Lus10008390.g ID=Lus10008390.BGIv1.0 annot-version=v1.0 ATGACGTCCGTTAAAAAAGGTTTGCCGCCGGGTCTGGTTTCCAATCTCCAGGATGTTCTAAACAGCAGAAAGGGCGGCGGTGGAGATGATGAGCCTTCCA ATGACGTGCCTTGTACTTCTACTTCTACCCTGGCAGGGAATGGGGATGATGATACCAGACCAATTGTTTTGGTCACCAACGGTGATGGAATCGATTCTCC TGGTCTTCTCTTTCTCATTGATGCTTTGGTTCGTGAAGCAAACTACAACGTTCATGTCTGCGCCCCGCAATTGGACAAATCAGCGTCAGGTCATTCTGTT ACACAAGGAGAAATGATAGCTGCAACTTCTGCTCAAATTAATGGAGCTACGGCATTTGAAATTTCAGGGACTCCTGTGGATTGTGTCTCATTAGCATTGT CTGGAGCACTCTTTTCTTGGTCAAAGCCTGTGCTGGTTATTAGTGGAATTAACAAGGGATCAAGCTGTGGTCACCAAATGTTTTACTCAGGTGTTGTCGC TGGAGCTAGAGAGGCATTAATAAATGGTGTCCCATCTATATCAATCTCACTTCACTGGAAGAAGGATGAAAGCCAGGAAAATGATTTCAAGGATGCTGTC GCTGTCTGTTTGCCATTGATAAATGCTGCTATTAGAGATATTCAGAAAGGGGGTTTTCCCAAATCTTGTTCTGTTAACATACAAATCCCTAGTTCACCAT CTGCAAACAAAGGTCTGAAACTTACGAAGCAAAGTAGGTGGCGGCATACCCTTAACTGGAATGCTGTTTCTGCAAACCGGCATCCCGGTGCTGGATACAT GTCTAATCAACAAAGCCTTGGATTACAGCTTGCACAGCTTGGTCGAGATGCCTCTGCTGCCGGAGCTGCACGTCGTGTAACCAAACAAAAGATGAATGTG GAGATCGAGTCAGTTGGGGCCTCTGGAAAACCTGATGTGAATAAAGTGAAAAAGTACTTTCGACTAGAGTTTATGGAGAAGGAGCAGGAAGACACGGACG AGGACCTGGATTTCAGGGCAATTGAAAATGGATATGTTGCAGTAACACCTATGTCCCTATCTCCACACATCGAATCCGACATGAATTCAGCAGCCTCTGA ATGGATCTCGTCTGCAGTTGAAGGAAGCCAGTAA
AA sequence Show only first row Show all	>Lus10008390 pacid=23152645 polypeptide=Lus10008390 locus=Lus10008390.g ID=Lus10008390.BGIv1.0 annot-version=v1.0 MTSVKKGLPPGLVSNLQDVLNSRKGGGGDDEPSNDVPCTSTSTLAGNGDDDTRPIVLVTNGDGIDSPGLLFLIDALVREANYNVHVCAPQLDKSASGHSV TQGEMIAATSAQINGATAFEISGTPVDCVSLALSGALFSWSKPVLVISGINKGSSCGHQMFYSGVVAGAREALINGVPSISISLHWKKDESQENDFKDAV AVCLPLINAAIRDIQKGGFPKSCSVNIQIPSSPSANKGLKLTKQSRWRHTLNWNAVSANRHPGAGYMSNQQSLGLQLAQLGRDASAAGAARRVTKQKMNV EIESVGASGKPDVNKVKKYFRLEFMEKEQEDTDEDLDFRAIENGYVAVTPMSLSPHIESDMNSAASEWISSAVEGSQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72880			Survival protein SurE-like pho...		Lus10008390 [exp]	0	1
AT1G30820			CTP synthase family protein (....		Lus10001218 [exp]	2.4	0.8481
AT1G33470			RNA-binding (RRM/RBD/RNP motif...		Lus10039151 [exp]	5.7	0.8466
AT1G33470			RNA-binding (RRM/RBD/RNP motif...		Lus10013781 [exp]	6.3	0.8244
AT1G73850			Protein of unknown function (D...		Lus10027226 [exp]	6.5	0.8375
					Lus10015658 [exp]	6.6	0.8475
AT4G17090		CT-BMY, BMY8, B...	BETA-AMYLASE 8, BETA-AMYLASE 3...		Lus10001087 [exp]	6.9	0.8313
AT3G24330			O-Glycosyl hydrolases family 1...		Lus10033082 [exp]	7.1	0.8417
AT2G17550			unknown protein		Lus10016693 [exp]	8.5	0.8163
AT3G01750			Ankyrin repeat family protein ...		Lus10022330 [exp]	8.7	0.8114
AT4G13800			Protein of unknown function (D...		Lus10022549 [exp]	10.5	0.7812

Compare expression of checked genes

Lus10008390 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.