Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13790 725 / 0 ATCWINV1, ATBFRUCT1 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) AT1G55120 642 / 0 ATFRUCT5, ATCWINV3 6-fructan exohydrolase, beta-fructofuranosidase 5 (.1.2.3) AT3G13784 627 / 0 ATCWINV5 cell wall invertase 5 (.1) AT3G52600 570 / 0 ATCWINV2 cell wall invertase 2 (.1.2) AT2G36190 570 / 0 ATCWINV4 cell wall invertase 4 (.1) AT5G11920 476 / 7e-163 ATCWINV6 6-&1-fructan exohydrolase (.1.2) AT1G62660 449 / 4e-151 Glycosyl hydrolases family 32 protein (.1) AT1G12240 432 / 4e-144 ATBETAFRUCT4, VAC-INV VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037633 [exp] 795 / 0 AT3G13790 704 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10015614 [exp] 684 / 0 AT3G13790 658 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10037632 [exp] 658 / 0 AT3G13790 648 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10015613 [exp] 636 / 0 AT3G13790 641 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10037631 [exp] 631 / 0 AT3G13790 633 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10014219 [exp] 562 / 0 AT2G36190 711 / 0.0 cell wall invertase 4 (.1) Lus10001529 [exp] 560 / 0 AT3G13790 598 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10014217 [exp] 559 / 0 AT2G36190 688 / 0.0 cell wall invertase 4 (.1) Lus10021339 [exp] 558 / 0 AT2G36190 691 / 0.0 cell wall invertase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G227400 [exp] 655 / 0 AT3G13790 703 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Potri.006G227500 [exp] 603 / 0 AT3G13790 660 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Potri.016G077400 [exp] 590 / 0 AT3G52600 755 / 0.0 cell wall invertase 2 (.1.2) Potri.006G210600 [exp] 588 / 0 AT3G52600 770 / 0.0 cell wall invertase 2 (.1.2) Potri.016G077500 [exp] 581 / 0 AT3G52600 751 / 0.0 cell wall invertase 2 (.1.2) Potri.003G112600 [exp] 452 / 5e-152 AT1G12240 882 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Potri.015G127100 [exp] 447 / 3e-150 AT1G62660 712 / 0.0 Glycosyl hydrolases family 32 protein (.1) Potri.003G126300 [exp] 438 / 9e-147 AT1G12240 819 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF08244 [flax] [poplar] Glyco_hydro_32C Glycosyl hydrolases family 32 C terminal CL0143 [flax] [poplar] B_Fructosidase PF00251 [flax] [poplar] Glyco_hydro_32N Glycosyl hydrolases family 32 N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10008392 pacid=23152640 polypeptide=Lus10008392 locus=Lus10008392.g ID=Lus10008392.BGIv1.0 annot-version=v1.0 ATGGCCGTACTAGTACAACAACACAATTCACTTCTCTACTTCTTTGCCTTGTTATCTATTTCCCAATTAGCTTTCCAGCTTCAAGCTTCCCACCATGTCC ACACCAACTTCCAAGCTCAACTCTCTGCTCTTTCTTCTTCTTCTTCTTCTTCATCTTCTTCTTCTTCAAAAGGCCAGCCTTATCGAACTGGATACCATTT CCAGCCTCCCAAGAACTGGATCAATGGACCCATGATCTATAAGGGTATTTATCATCTATTCTACCAATACAATCCCAAAGGTGCAGTTTGGGGGAACATT GTCTGGGCCCACTCAACATCGACCGATTTGGTCAATTGGAAGCCTCAAGGTTATGGTATTTACCCATCTATTCCCTCAGATATAAATGGTACCTGGTCCG GTTCAGCTACTTTCCTTCTCGATGGCACTCCCGCTATTCTCTACACCGGAATCAACCCCAAAAATCAACAGGTTCAAAATTTGGCTGTCCCCAAAAATGC ATCCGACCCATATCTTCGAAAATGGGTTAAATCAACCAAGAATCCATTGATGGCGCCTACCCCACAAAATGGAATCAATGCATCCTCATTCAGAGATCCA ACCACTGCCTGGTTGGGTCCTGACAAGACCTGGCGTGTAATTATTGGTAGCAAAATTGACCGTAAAGGGATGGCTATTTTGTATAAGAGCAAAGATTTTG TGAATTGGGTTAGAGCTAACCACCCTTTGCATTCGACCGAGGGTACTGGAATGTGGGAGTGTCCTGACTTTTTTCCTGTTCTTATGGGTGGCTATAAAAG TGGGATTGACGCATCTAAACTCGGTCCAAGCGTGAAACATGTGCTGAAAGTGAGTCTTGACGATACGAAACATGATCACTACACGATTGGGAAGTATGAT CCTATTAAGGATGTGTACACTCCTGACCATGACGGACTTGCTGAGAAAGATTTCGGATTGAGATATGATTACGGGAAGTATTATGCATCGAAAACGTTCT TTGATTCGTCATTGAACCGTCGTATCTTATTGGGTTGGATTAACGAATCATCTAGTGTGGCGGATGACATCAAGAAGGGATGGTCTGGAGTACATACAAT TCCAAGAACAATATGGTTGCACAGATCAGGAAAGCAGCTTGTTCAATGGCCCGTGAAGGAAATCGAAAAACTCAGAGGGAAGGCTGTGAAAGTGCCAGCT CAAGTGGTAAACCCAGGATCTAGACTTGAAGTGTCGGGGATCACAGCAGCACAGGCCGATGTGGAGATCTTCTTTGGAAAATTAGACTTGAGCAAAGCAG AAAGGTTGGACCCAAGTTGGACTAACCTAAACCCACAGTTGATTTGTAGCCAAAGAGGTGCATCAGTAAGAGGCGGGTTAGGCCCATTTGGATTCCTGGT TTTGGGGTCAAAGGGATTGGAGGAATACACTGCAGTTTTCTTTAGAATATTCAAAGTAAATACTGGTAAACATGTTGTGCTCATGTGCAGCGACCAAAGC AGGTCATCGTTGAACAATGCTAATGATAAAACTACATACGGGACTTTTGTGGACATAGATCCTGCTCGTGAATATCTCTCTCTTAGAACTTTGATTGATC ATTCTATAGTGGAGAGCTTTGGAGGATTTGGAAAGAGCTGCATCACAGCAAGAGTATACCCGACAATAGCCATAGATGGGGCTGCCCACTTGTACGTTTT CAACAATGGAACACAACATGTGAGGATTGGAAGACTGAATGCATGGAACATGAAGAAAGCCCATATTGCTTGA
AA sequence Show only first row Show all	>Lus10008392 pacid=23152640 polypeptide=Lus10008392 locus=Lus10008392.g ID=Lus10008392.BGIv1.0 annot-version=v1.0 MAVLVQQHNSLLYFFALLSISQLAFQLQASHHVHTNFQAQLSALSSSSSSSSSSSSKGQPYRTGYHFQPPKNWINGPMIYKGIYHLFYQYNPKGAVWGNI VWAHSTSTDLVNWKPQGYGIYPSIPSDINGTWSGSATFLLDGTPAILYTGINPKNQQVQNLAVPKNASDPYLRKWVKSTKNPLMAPTPQNGINASSFRDP TTAWLGPDKTWRVIIGSKIDRKGMAILYKSKDFVNWVRANHPLHSTEGTGMWECPDFFPVLMGGYKSGIDASKLGPSVKHVLKVSLDDTKHDHYTIGKYD PIKDVYTPDHDGLAEKDFGLRYDYGKYYASKTFFDSSLNRRILLGWINESSSVADDIKKGWSGVHTIPRTIWLHRSGKQLVQWPVKEIEKLRGKAVKVPA QVVNPGSRLEVSGITAAQADVEIFFGKLDLSKAERLDPSWTNLNPQLICSQRGASVRGGLGPFGFLVLGSKGLEEYTAVFFRIFKVNTGKHVVLMCSDQS RSSLNNANDKTTYGTFVDIDPAREYLSLRTLIDHSIVESFGGFGKSCITARVYPTIAIDGAAHLYVFNNGTQHVRIGRLNAWNMKKAHIA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Lus10008392 [exp]	0	1
AT3G19660			unknown protein		Lus10012438 [exp]	2.4	0.9463
AT5G66870	AS2	LBD36, ASL1	LATERAL ORGAN BOUNDARIES DOMAI...		Lus10022463 [exp]	6.3	0.9430
AT5G62150			peptidoglycan-binding LysM dom...		Lus10015011 [exp]	6.5	0.9592
AT3G52190		AtPHF1, PHF1	phosphate transporter traffic ...		Lus10038651 [exp]	12.0	0.9212
AT2G48020			Major facilitator superfamily ...		Lus10008184 [exp]	12.3	0.9544
AT2G01170		BAT1	bidirectional amino acid trans...		Lus10039616 [exp]	14.0	0.9269
AT3G21630		LYSMRLK1, CERK1	LYSM DOMAIN RECEPTOR-LIKE KINA...		Lus10030022 [exp]	14.1	0.9499
AT1G15530			Concanavalin A-like lectin pro...		Lus10019879 [exp]	14.7	0.9454
AT1G29760			Putative adipose-regulatory pr...		Lus10033273 [exp]	17.7	0.9266
AT3G57530		ATCPK32, CDPK32...	calcium-dependent protein kina...		Lus10026742 [exp]	17.7	0.9416

Compare expression of checked genes

Lus10008392 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.