Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52280 139 / 2e-39 GTE6 general transcription factor group E6 (.1.2) AT2G34900 123 / 3e-34 GTE1, GTE01, IMB1 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2) AT5G10550 81 / 2e-17 GTE2 global transcription factor group E2 (.1) AT1G06230 79 / 6e-17 GTE4 global transcription factor group E4 (.1.2.3) AT1G73150 78 / 9e-17 GTE3 global transcription factor group E3 (.1) AT1G17790 78 / 1e-16 DNA-binding bromodomain-containing protein (.1) AT5G65630 75 / 2e-15 GTE7 global transcription factor group E7 (.1) AT3G27260 61 / 1e-10 GTE8 global transcription factor group E8 (.1.2) AT5G46550 60 / 2e-10 DNA-binding bromodomain-containing protein (.1) AT3G01770 56 / 4e-09 ATBET10 bromodomain and extraterminal domain protein 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029774 [exp] 213 / 9e-68 AT2G34900 378 / 5e-130 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2) Lus10042803 [exp] 210 / 3e-66 AT2G34900 362 / 3e-123 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2) Lus10018900 [exp] 137 / 4e-39 AT2G34900 254 / 2e-84 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2) Lus10017661 [exp] 83 / 4e-18 AT1G06230 499 / 3e-165 global transcription factor group E4 (.1.2.3) Lus10033624 [exp] 83 / 5e-18 AT1G06230 494 / 2e-163 global transcription factor group E4 (.1.2.3) Lus10033623 [exp] 82 / 5e-18 AT1G06230 493 / 9e-164 global transcription factor group E4 (.1.2.3) Lus10038546 [exp] 76 / 7e-16 AT4G20910 806 / 0.0 HUA ENHANCER 1, CORYMBOSA 2, double-stranded RNA binding protein-related / DsRBD protein-related (.1.2) Lus10023257 [exp] 76 / 1e-15 AT4G20910 818 / 0.0 HUA ENHANCER 1, CORYMBOSA 2, double-stranded RNA binding protein-related / DsRBD protein-related (.1.2) Lus10032076 [exp] 66 / 2e-12 AT3G27260 450 / 6e-147 global transcription factor group E8 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G043000 [exp] 189 / 1e-58 AT2G34900 341 / 2e-115 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2) Potri.010G219200 [exp] 184 / 1e-56 AT2G34900 333 / 2e-112 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2) Potri.001G073800 [exp] 150 / 2e-43 AT2G34900 350 / 7e-119 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2) Potri.019G090700 [exp] 79 / 7e-17 AT1G06230 443 / 2e-145 global transcription factor group E4 (.1.2.3) Potri.011G096400 [exp] 79 / 9e-17 AT1G06230 243 / 5e-72 global transcription factor group E4 (.1.2.3) Potri.001G376400 [exp] 78 / 9e-17 AT1G06230 267 / 4e-82 global transcription factor group E4 (.1.2.3) Potri.013G118900 [exp] 77 / 2e-16 AT1G06230 463 / 5e-153 global transcription factor group E4 (.1.2.3) Potri.001G335000 [exp] 69 / 2e-13 AT3G27260 460 / 5e-151 global transcription factor group E8 (.1.2) Potri.001G285700 [exp] 68 / 3e-13 AT1G73150 214 / 4e-63 global transcription factor group E3 (.1) Potri.009G080000 [exp] 67 / 8e-13 AT5G65630 180 / 1e-49 global transcription factor group E7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00439 [flax] [poplar] Bromodomain Bromodomain
Representative CDS sequence Show only first row Show all	>Lus10008393 pacid=23152638 polypeptide=Lus10008393 locus=Lus10008393.g ID=Lus10008393.BGIv1.0 annot-version=v1.0 ATGCTTGATGATGATGCTGAAGCTTACATGAAGGAGAAGCAGGGCCTTAACATCAGGAAGCAGCAGCAAGAAGCTTTTAAGCGGGAAGCTGCCGCATCTA AGAGACTGCAGGAGCTTATTCGTCAATTTGAAGGTGTTCTTTGTCAGCTTACTCAACACAAATGGGCATGGCTTTTGCAACCCTTGGATGTTGAAGGTCT TGGCTTGCATGACTACCACTACGAGGTTCGTGATAAGCCAATGGGTTTTAGTACGATAAAGAATCTGATGGGAAACAAGGACGCAAATAGTTATAAGAAT GCCAGAGAGATATGTGCTGATGTGAGATTAGTATTTAAGAACGCAATAAAATGTAACAAAGAAAGGGGTGATGCTCATGTTACGGCAAAAGCTTTGTTGG AAAAGTTTGAAGAGAAATGGCTGCATTACACGGCGCCTGAATCACTTATGGTCGAGCTGCCATCAGATTATGTACCTGTAAGAGATGTCCACCTAGGAGG ATCATGTAATGCAGGAGATAGCTACTGTTGTGGCCAAGTTATACATGGAGATGTTATCATGGTTTCAATTGTCCTCACACATGAAACACTCAATCATCTT CAAATATTTCAATGTGTCTTGGCGTCTCCTACTGAAGTTTTCCCTGCTGAATTATGCTGA
AA sequence Show only first row Show all	>Lus10008393 pacid=23152638 polypeptide=Lus10008393 locus=Lus10008393.g ID=Lus10008393.BGIv1.0 annot-version=v1.0 MLDDDAEAYMKEKQGLNIRKQQQEAFKREAAASKRLQELIRQFEGVLCQLTQHKWAWLLQPLDVEGLGLHDYHYEVRDKPMGFSTIKNLMGNKDANSYKN AREICADVRLVFKNAIKCNKERGDAHVTAKALLEKFEEKWLHYTAPESLMVELPSDYVPVRDVHLGGSCNAGDSYCCGQVIHGDVIMVSIVLTHETLNHL QIFQCVLASPTEVFPAELC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52280		GTE6	general transcription factor g...		Lus10008393 [exp]	0	1
AT3G03580			Tetratricopeptide repeat (TPR)...		Lus10004744 [exp]	2.0	0.7593
AT5G60335			Thioesterase superfamily prote...		Lus10009162 [exp]	3.3	0.8069
AT4G15720			Tetratricopeptide repeat (TPR)...		Lus10006517 [exp]	4.5	0.7577
AT2G39170			unknown protein		Lus10040608 [exp]	11.2	0.7590
AT5G63905			unknown protein		Lus10007744 [exp]	13.0	0.7564
AT1G64810		APO1	ACCUMULATION OF PHOTOSYSTEM ON...		Lus10039122 [exp]	29.2	0.7350
AT2G32520			alpha/beta-Hydrolases superfam...		Lus10035287 [exp]	29.2	0.7092
AT5G11340			Acyl-CoA N-acyltransferases (N...		Lus10008088 [exp]	33.8	0.7072
AT3G24000			Tetratricopeptide repeat (TPR)...		Lus10002561 [exp]	34.6	0.7034
AT2G42770			Peroxisomal membrane 22 kDa (M...		Lus10001421 [exp]	38.5	0.7150

Compare expression of checked genes

Lus10008393 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.