Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G21040 654 / 0 FBX2 F-box protein 2 (.1.2) AT1G24530 59 / 4e-09 Transducin/WD40 repeat-like superfamily protein (.1) AT3G50390 59 / 6e-09 Transducin/WD40 repeat-like superfamily protein (.1) AT2G47410 58 / 1e-08 WD40/YVTN repeat-like-containing domain;Bromodomain (.1.2) AT3G49660 56 / 3e-08 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G51980 55 / 7e-08 C3HZnF Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G49430 55 / 1e-07 WD40/YVTN repeat-like-containing domain;Bromodomain (.1) AT5G49200 54 / 1e-07 C3HZnF WD-40 repeat family protein / zfwd4 protein (ZFWD4) (.1) AT4G25440 54 / 2e-07 C3HZnF ZFWD1 zinc finger WD40 repeat protein 1 (.1) AT1G47610 53 / 3e-07 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026770 [exp] 993 / 0 AT5G21040 647 / 0.0 F-box protein 2 (.1.2) Lus10006511 [exp] 59 / 5e-09 AT4G15900 753 / 0.0 pleiotropic regulatory locus 1 (.1) Lus10031629 [exp] 58 / 1e-08 AT1G71840 488 / 2e-172 transducin family protein / WD-40 repeat family protein (.1) Lus10037500 [exp] 58 / 1e-08 AT4G15900 752 / 0.0 pleiotropic regulatory locus 1 (.1) Lus10014674 [exp] 57 / 1e-08 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 55 / 8e-08 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10033710 [exp] 55 / 1e-07 AT1G71840 489 / 2e-166 transducin family protein / WD-40 repeat family protein (.1) Lus10016882 [exp] 55 / 1e-07 AT5G49430 995 / 0.0 WD40/YVTN repeat-like-containing domain;Bromodomain (.1) Lus10037748 [exp] 55 / 2e-07 AT5G49430 1224 / 0.0 WD40/YVTN repeat-like-containing domain;Bromodomain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G157900 [exp] 721 / 0 AT5G21040 670 / 0.0 F-box protein 2 (.1.2) Potri.010G012800 [exp] 59 / 4e-09 AT4G15900 731 / 0.0 pleiotropic regulatory locus 1 (.1) Potri.001G173500 [exp] 59 / 5e-09 AT1G15440 1342 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) Potri.007G009500 [exp] 56 / 2e-08 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G134800 [exp] 57 / 3e-08 AT4G25440 600 / 0.0 zinc finger WD40 repeat protein 1 (.1) Potri.002G051900 [exp] 56 / 3e-08 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G077800 [exp] 56 / 3e-08 AT5G51980 391 / 5e-132 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.003G060500 [exp] 57 / 4e-08 AT1G15440 1349 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) Potri.015G137200 [exp] 56 / 6e-08 AT4G25440 587 / 0.0 zinc finger WD40 repeat protein 1 (.1) Potri.002G117500 [exp] 56 / 7e-08 AT4G07410 1053 / 0.0 POPCORN, Transducin family protein / WD-40 repeat family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10008402 pacid=23163481 polypeptide=Lus10008402 locus=Lus10008402.g ID=Lus10008402.BGIv1.0 annot-version=v1.0 ATGGAATTTGAATGCCAATCAATCATTGAGGTAACAAGCAATCAAGATAGTGTGGATAATTCTGTTCTTGAAATTAGGGATTGTACAATTTCACAGCAAA AGAAGTCAGATTTCTCTTCTCGAAGGGAAAAAATAACCAGTGTTTTGGTGAAAGAGTTCCCCGGCGGTGGTGATGACGTTCTGCGTAGGTCAATCACAGA CCTTCCTCCAGCATTGATATCTGAGATCCTGAATTGCTTAGACCCTAAGGAGCTTGGTGTTGTTTCGTGCGTCTCCACCGTTCTGAACTCGTTAGCAGCT GAGAATCCCGTTTGGAAGGAAGTCTATTGTGAGCGATGGGGGCTTCCTTTAATCCCCTCCCCGGTAGGGGTAGGGATTTCAGATGACAAGAAGTGGAAGG AGCTCTTTGTGGAGAGGGAGTTTAGGAGTAGAACATTTTTGGGTCGTTACAGCATTGATGTTTTGTACGGTCACAAGGAAGCTGTTCGGACCGTGTTCCT CTTGGCTTCGGCCAAGCTCATTTTCACTTCCGGGTATGACTCAGTCGTACAGATGTGGGACATGGAAACCGGTCTTGCGATTGCATCGTCCCGGCCCCTC GGATGCACCATTCGAGCTGTTGCTGCTGATGCGAAATTACTGGTTGCCGGCGGCACTGATGGGTTTATTCAAGGTTGGAAGGCCATTGATGGTCTCCCTC ACTTGTTCGACCTCAAGGGTACGGAGGAGCCAACTTCTATGTTCAGGCTTTGGGAGCACGGAGGACCTATTACTTCTCTTGCTTTGGATCCGACGAAAAT TTATAGTGGTTCTTGGGACATGGCTGTTCGTTTATGGGATCGAGTTTCGCTGGAATGTGTGAAGGTTTTGAGTCATTATGACTGGGTTTGGTGCCTTGTT CCTCATGGTACTACTGTTGCAAGTACTTCCGGTTCCGATGTGTACATTTGGGATACTCTTAGGGGTACCTTGCTGAATGTTATTACACAGGCTCACGCCG GGAATGTCTATGCCTTGGCTCGAAGCCACACCGGGGAGTTTCTTTTCACTGGAGGAGAAGACGGATCCATACACATGTTCGAGATAAGTAATAACGATTC TCAGAAAATTGCTTCTTGGATTGCTCATTCCGGTCCGGTTTACTCCCTCGCGTTTGAGTTCCCCTGGCTCGTTTCATCCTCTGGTGATGGGAAAATGGCG CTTATGGATGTGAGGAAATTGCTGAGATCAGGTTCTTCGAGGGTAAGAAAGTCCCAGAACAAAATTGTGGAGCCTCCCCAGAGAATGTTGCATGGGTTTG GGCCCGATTTGTTCTCGGTGGATATCGGTGCTGACCGGATAGTCTGTGGGGGAGAAGAAGGTGTTGTTAGGATCTGGAACTTCTCGGAAGCATTGGAGAC CGAACGGAGGGTTCGTGCGCTCAGAGGGATGCGGATGGAGAATAGGATGCGCCGCCGTAAGCTCCAGACTGAGATGGGGAGCAAGAGTGGCCGGACCGGT CAATGCTCAGTTGCGGCCAACAAGAACTCGATGAATGGGGATCATAACGTGGTCTGGCACAGTAAGCGTGGGGTGAGTGGGAAGCTGAAGGCTTAG
AA sequence Show only first row Show all	>Lus10008402 pacid=23163481 polypeptide=Lus10008402 locus=Lus10008402.g ID=Lus10008402.BGIv1.0 annot-version=v1.0 MEFECQSIIEVTSNQDSVDNSVLEIRDCTISQQKKSDFSSRREKITSVLVKEFPGGGDDVLRRSITDLPPALISEILNCLDPKELGVVSCVSTVLNSLAA ENPVWKEVYCERWGLPLIPSPVGVGISDDKKWKELFVEREFRSRTFLGRYSIDVLYGHKEAVRTVFLLASAKLIFTSGYDSVVQMWDMETGLAIASSRPL GCTIRAVAADAKLLVAGGTDGFIQGWKAIDGLPHLFDLKGTEEPTSMFRLWEHGGPITSLALDPTKIYSGSWDMAVRLWDRVSLECVKVLSHYDWVWCLV PHGTTVASTSGSDVYIWDTLRGTLLNVITQAHAGNVYALARSHTGEFLFTGGEDGSIHMFEISNNDSQKIASWIAHSGPVYSLAFEFPWLVSSSGDGKMA LMDVRKLLRSGSSRVRKSQNKIVEPPQRMLHGFGPDLFSVDIGADRIVCGGEEGVVRIWNFSEALETERRVRALRGMRMENRMRRRKLQTEMGSKSGRTG QCSVAANKNSMNGDHNVVWHSKRGVSGKLKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G21040		FBX2	F-box protein 2 (.1.2)		Lus10008402 [exp]	0	1
AT5G57360		LKP1, FKL2, ADO...	ZEITLUPE, LOV KELCH PROTEIN 1,...		Lus10015531 [exp]	1.0	0.9161
AT1G43690			ubiquitin interaction motif-co...		Lus10005002 [exp]	2.0	0.9133
AT3G10370		SDP6	SUGAR-DEPENDENT 6, FAD-depende...		Lus10007931 [exp]	2.4	0.9018
AT4G02440		EID1	EMPFINDLICHER IM DUNKELROTEN L...		Lus10007870 [exp]	5.5	0.8614
AT3G10370		SDP6	SUGAR-DEPENDENT 6, FAD-depende...		Lus10013467 [exp]	6.3	0.8493
					Lus10011573 [exp]	7.2	0.8473
AT3G62630			Protein of unknown function (D...		Lus10020690 [exp]	7.5	0.8357
AT4G11090		TBL23	TRICHOME BIREFRINGENCE-LIKE 23...		Lus10032367 [exp]	11.3	0.8539
AT1G21370			unknown protein		Lus10029764 [exp]	11.7	0.8752
AT3G58050			unknown protein		Lus10016244 [exp]	13.2	0.8595

Compare expression of checked genes

Lus10008402 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.