Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10950 132 / 1e-35 SGNH hydrolase-type esterase superfamily protein (.1) AT5G37690 100 / 6e-24 SGNH hydrolase-type esterase superfamily protein (.1) AT1G71250 89 / 7e-20 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G50400 89 / 1e-19 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G06990 87 / 3e-19 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G14820 83 / 1e-17 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G04570 81 / 4e-17 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G15720 80 / 7e-17 GLIP7 GDSL-motif lipase 7 (.1) AT5G08460 79 / 3e-16 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G30310 77 / 6e-16 GDSL-like Lipase/Acylhydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001532 [exp] 136 / 1e-36 AT4G10950 544 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Lus10032399 [exp] 134 / 4e-36 AT4G10950 495 / 1e-175 SGNH hydrolase-type esterase superfamily protein (.1) Lus10039877 [exp] 97 / 2e-22 AT5G37690 527 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Lus10018641 [exp] 91 / 2e-20 AT5G37690 516 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Lus10026074 [exp] 89 / 1e-19 AT1G75900 339 / 3e-115 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016929 [exp] 87 / 6e-19 AT1G71691 473 / 2e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10022471 [exp] 85 / 2e-18 AT2G23540 589 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016775 [exp] 85 / 2e-18 AT2G23540 592 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034542 [exp] 85 / 2e-18 AT1G75900 340 / 6e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G157800 [exp] 274 / 4e-90 AT4G10950 233 / 5e-73 SGNH hydrolase-type esterase superfamily protein (.1) Potri.003G141300 [exp] 138 / 1e-37 AT4G10950 535 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.007G062342 [exp] 115 / 2e-30 AT4G10950 337 / 7e-116 SGNH hydrolase-type esterase superfamily protein (.1) Potri.017G130100 [exp] 106 / 4e-26 AT5G37690 526 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.004G086700 [exp] 86 / 5e-19 AT5G37690 527 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G205100 [exp] 82 / 2e-17 AT2G42990 492 / 2e-175 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.014G160100 [exp] 81 / 3e-17 AT2G04570 497 / 5e-178 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G219700 [exp] 81 / 7e-17 AT2G42990 439 / 1e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.007G036300 [exp] 78 / 4e-16 AT2G23540 554 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G076600 [exp] 78 / 4e-16 AT1G71691 477 / 5e-169 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10008403 pacid=23163504 polypeptide=Lus10008403 locus=Lus10008403.g ID=Lus10008403.BGIv1.0 annot-version=v1.0 ATGGTTAACCGAGTAGATAGAGCAGCTCTTGTCTTCTTGAAATCGGCAACAATGCGACAGATGAAATCGACAGCAACCATCGTCTGGGTTCTTGTTCCTC TCCTGGCTCTTTCAGTGACAAGAACTCAAACTTCTGCTGTATCTGCAATGTTCATAATGGGAGACTCTTCCGTTGATTGCGGAGAGAACACTCTCTTTTA CCCTCTCCTCCACAGAAACCTATCTCTGTTCCCTTGCCAAGGCTCCCAGACCTCCCTCCTACCTTACCTCCTCGCTAAGAAAATGGGACTACCGATGCTA CCATTGCCGTTCTACAAGCAGAATGGGACGATGGAAGAGGTTCGCAGCGGGTTAAACTATGGGTCAGCAGGGGCGACCATCATGAACATAGACAGCTTGA GCCACCAGTGTCTAACCCAACAATTAAGGCAAGTTCTTGAGACATTCCAGCTGCTTGAGCTGCATTTGGGCCAGGAAACTGCTGAGAGATTCGTCAACGA ATCCATGTTCTACCTTTCGTTCGGGAAAGACGACTACGTGGACATCTTCCTCGCAGGAAAGGCCACAAGGGCGCTAGGTGGCAGTGGCGAGAGGAGCAGT GAGTTTGCTCAGGTTTTGGTGCACCAGGTGGTGATGGTGGTGAGGAGGCTGTATGAAGGGAATGTGAAGAGAGTTGTGTGCATGGGGATACTACCGGTTG GGTGCGCGCCGAGGACGGTTTGGGACTTGGGTTGGAATCTGAGTTTGGTTGATGAGCGGACCGGGTGTGTGAGGGAGGTTAATGAGTTGGTTTTGGAGTA TAACCGGTTGTTGGGTGATGGGATTGTGGAGCTTCAGAGGGAACTTCCTGATGCTCAGTTGGTCTTCTGTGATGTGTATCAAGTTATGATTGATATCCTC ACCAACCCTGCTAATTACGGTAATGCCTTCCCTTTAATCTAA
AA sequence Show only first row Show all	>Lus10008403 pacid=23163504 polypeptide=Lus10008403 locus=Lus10008403.g ID=Lus10008403.BGIv1.0 annot-version=v1.0 MVNRVDRAALVFLKSATMRQMKSTATIVWVLVPLLALSVTRTQTSAVSAMFIMGDSSVDCGENTLFYPLLHRNLSLFPCQGSQTSLLPYLLAKKMGLPML PLPFYKQNGTMEEVRSGLNYGSAGATIMNIDSLSHQCLTQQLRQVLETFQLLELHLGQETAERFVNESMFYLSFGKDDYVDIFLAGKATRALGGSGERSS EFAQVLVHQVVMVVRRLYEGNVKRVVCMGILPVGCAPRTVWDLGWNLSLVDERTGCVREVNELVLEYNRLLGDGIVELQRELPDAQLVFCDVYQVMIDIL TNPANYGNAFPLI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10950			SGNH hydrolase-type esterase s...		Lus10008403 [exp]	0	1
					Lus10024691 [exp]	4.0	0.7734
AT3G54510			Early-responsive to dehydratio...		Lus10043455 [exp]	4.2	0.7774
AT5G04360		ATPU1 ,ATLDA	PULLULANASE 1, limit dextrinas...		Lus10038675 [exp]	7.9	0.7698
AT1G08710			F-box family protein (.1.2)		Lus10020340 [exp]	12.8	0.6363
AT4G17140			pleckstrin homology (PH) domai...		Lus10006816 [exp]	13.7	0.7513
AT5G56750		NDL1	N-MYC downregulated-like 1 (.1...		Lus10026433 [exp]	14.7	0.7460
AT4G10950			SGNH hydrolase-type esterase s...		Lus10008404 [exp]	28.2	0.5941
AT2G03090		ATHEXPALPHA1.3,...	EXPANSIN 15, expansin A15 (.1)		Lus10020257 [exp]	28.3	0.6868
AT1G36390			Co-chaperone GrpE family prote...		Lus10042696 [exp]	28.6	0.6951
AT2G42990			GDSL-like Lipase/Acylhydrolase...		Lus10029958 [exp]	35.1	0.7182

Compare expression of checked genes

Lus10008403 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.