Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74470 473 / 6e-165 Pyridine nucleotide-disulphide oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021665 [exp] 469 / 6e-163 AT1G74470 784 / 0.0 Pyridine nucleotide-disulphide oxidoreductase family protein (.1) Lus10001642 [exp] 464 / 2e-161 AT1G74470 782 / 0.0 Pyridine nucleotide-disulphide oxidoreductase family protein (.1) Lus10026772 [exp] 205 / 6e-65 AT1G74470 126 / 2e-35 Pyridine nucleotide-disulphide oxidoreductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G157700 [exp] 585 / 0 AT1G74470 517 / 0.0 Pyridine nucleotide-disulphide oxidoreductase family protein (.1) Potri.004G195800 [exp] 580 / 0 AT1G74470 521 / 0.0 Pyridine nucleotide-disulphide oxidoreductase family protein (.1) Potri.012G068801 [exp] 469 / 2e-163 AT1G74470 774 / 0.0 Pyridine nucleotide-disulphide oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01494 [flax] [poplar] FAD_binding_3 FAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10008405 pacid=23163491 polypeptide=Lus10008405 locus=Lus10008405.g ID=Lus10008405.BGIv1.0 annot-version=v1.0 ATGGCGGCTGCTCAAGTTCACTCCCTTCTACTCATCACCTCCTACAAGCAATCCCACTCTAGAAGACTCGGACCCCGCAGCCTCACCATCACCGCCGCTT CCAATGCCCCCATTTCCGGCAGAAAGCTCCGGGTCGCCGTCATCGGGGGAGGCCCCGCAGGTTCCTCCGCCGCCGAGACCCTCGCCGCCGCCGGAATAGA AACCTTCCTCTTCGAACGGAACAACTCTTCCACTCCCAAGCCATGCGGTGGAGCCATCCCGCTATGTATGCTCGACGAGTTCTCCATCCCTCTCCACCTC GTCGACCGCCGCGTCACCAAGAAGAAGATCATTTATCCTAAGATGAAGATCATTTCTCCTTCCAATCTCGCCGTCGATTTCGGCTCCAAAACCCTGGAGC AGCACGAGTACATCCCCATGCTCCGCCGTGAGGTACTCGATTCCTTCCTCCGATCCCGCGCCCAATCCAACGGTGCTCGATTGATCCAATCCCTCGTCAC GCATCTCGAGGTCCCTCCTTCCTCCGCTCATCCTTACGTCATCCACCACACAGTCGACAACGAGAAGAGGACATTAGCCGTCGACGCTGTCGTCGGAGCC GACGGCGCCAATGGTCGAGTGGCGAAGTCAATCGCTGCTGGTGACTACACCTGCGCGATGGCGTTCCAGGAGCGGATCCGTCTCCCGGATGATAAAATGG AATATTACCAAAATCTCGCCGAGATGTACGTCGGCGACGACGTCTCCCCCGATTTTTACGCCTGGGTTTTCCCAAAATGCGACCACGTGGCGGTGGGTAC CGGGACGGTTTCCTCGAAGAAGAGCATCAAGTACTACCAGCGAGGAATACGTGAGCGCGTGAGGCACAAGATCGCCGGAGGGAAAGTGATCCGGGTCGAG GCCCACCCGATCCCGGAGCACCCACGCCCGACGCGAGTGCGGGGGCGCGTGGCGCTTGTGGGAGACGCGGCGGGTTACGTGACCAAATGCTCCGGGGAAG GGATCTATTTTGCGGCGAAATCAGGGAGGATGTGCGGGGAAGCGATCGTGAAGGCGTCGGAAGGAGGGGAGAAGATGATCGGAGAGGCGGATCTGAAGAG GGAGTATCTCCGGCGGTGGGACGGCGAGTTCTCCACGACGTTCAGGTTTCTGGACGCGCTGCAGAGCGTGTTCTACAGGAGCAACGCGGCTAGGGAGGCG CTGGTGGAGCTGTGTGGAGACGAGTATGTGCAGAGGATGACGTTCGATAGCTATCTGTATAAGAAGCTGGCGGCGAGGAACGGGTGGGAGGATGTGAGGA TGGCGGCGAATACGATTGGGAGCCTGATACGGTGCCGGATTGTTGGCCGGGGTGGCGGAGGCGAGGCGGCGGAGGTTTTTAGTAGGTTTGTTTGA
AA sequence Show only first row Show all	>Lus10008405 pacid=23163491 polypeptide=Lus10008405 locus=Lus10008405.g ID=Lus10008405.BGIv1.0 annot-version=v1.0 MAAAQVHSLLLITSYKQSHSRRLGPRSLTITAASNAPISGRKLRVAVIGGGPAGSSAAETLAAAGIETFLFERNNSSTPKPCGGAIPLCMLDEFSIPLHL VDRRVTKKKIIYPKMKIISPSNLAVDFGSKTLEQHEYIPMLRREVLDSFLRSRAQSNGARLIQSLVTHLEVPPSSAHPYVIHHTVDNEKRTLAVDAVVGA DGANGRVAKSIAAGDYTCAMAFQERIRLPDDKMEYYQNLAEMYVGDDVSPDFYAWVFPKCDHVAVGTGTVSSKKSIKYYQRGIRERVRHKIAGGKVIRVE AHPIPEHPRPTRVRGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCGEAIVKASEGGEKMIGEADLKREYLRRWDGEFSTTFRFLDALQSVFYRSNAAREA LVELCGDEYVQRMTFDSYLYKKLAARNGWEDVRMAANTIGSLIRCRIVGRGGGGEAAEVFSRFV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74470			Pyridine nucleotide-disulphide...		Lus10008405 [exp]	0	1
AT1G43580			Sphingomyelin synthetase famil...		Lus10042814 [exp]	1.4	0.9192
AT1G65030			Transducin/WD40 repeat-like su...		Lus10038299 [exp]	2.6	0.9311
AT1G14060			GCK domain-containing protein ...		Lus10026621 [exp]	7.7	0.9077
AT2G44065			Ribosomal protein L2 family (....		Lus10001572 [exp]	10.8	0.9090
					Lus10041954 [exp]	11.5	0.9050
AT2G27260			Late embryogenesis abundant (L...		Lus10034173 [exp]	12.2	0.9052
AT5G13450		ATP5	delta subunit of Mt ATP syntha...		Lus10019706 [exp]	14.7	0.9067
AT5G53800			unknown protein		Lus10014800 [exp]	15.0	0.9031
AT1G27090			glycine-rich protein (.1)		Lus10037224 [exp]	19.5	0.9145
AT5G41670			6-phosphogluconate dehydrogena...		Lus10024725 [exp]	24.0	0.9052

Compare expression of checked genes

Lus10008405 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.