Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11830 927 / 0 TCP-1/cpn60 chaperonin family protein (.1.2) AT3G20050 308 / 4e-98 ATTCP-1 T-complex protein 1 alpha subunit (.1) AT5G20890 268 / 9e-83 TCP-1/cpn60 chaperonin family protein (.1) AT3G18190 254 / 2e-77 TCP-1/cpn60 chaperonin family protein (.1) AT5G26360 252 / 1e-76 TCP-1/cpn60 chaperonin family protein (.1) AT1G24510 220 / 1e-64 TCP-1/cpn60 chaperonin family protein (.1.2) AT3G03960 206 / 2e-59 TCP-1/cpn60 chaperonin family protein (.1) AT3G02530 150 / 5e-39 TCP-1/cpn60 chaperonin family protein (.1) AT5G16070 147 / 5e-38 TCP-1/cpn60 chaperonin family protein (.1) AT1G55490 58 / 1e-08 Cpn60beta1, LEN1, CPN60B LESION INITIATION 1, chaperonin-60beta1, chaperonin 60 beta (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026773 [exp] 920 / 0 AT3G11830 920 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10032467 [exp] 303 / 4e-96 AT3G20050 996 / 0.0 T-complex protein 1 alpha subunit (.1) Lus10037214 [exp] 303 / 4e-96 AT3G20050 999 / 0.0 T-complex protein 1 alpha subunit (.1) Lus10042966 [exp] 298 / 3e-94 AT3G20050 991 / 0.0 T-complex protein 1 alpha subunit (.1) Lus10032176 [exp] 273 / 1e-84 AT5G20890 949 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10012380 [exp] 271 / 7e-84 AT5G20890 942 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10014511 [exp] 267 / 1e-82 AT5G20890 916 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10021150 [exp] 253 / 1e-76 AT5G26360 1046 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10017853 [exp] 252 / 2e-76 AT5G26360 1041 / 0.0 TCP-1/cpn60 chaperonin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G157400 [exp] 945 / 0 AT3G11830 929 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.004G195300 [exp] 944 / 0 AT3G11830 985 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.004G195100 [exp] 318 / 1e-106 AT3G11830 353 / 6e-121 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.002G142700 [exp] 312 / 1e-99 AT3G20050 994 / 0.0 T-complex protein 1 alpha subunit (.1) Potri.014G058500 [exp] 305 / 4e-97 AT3G20050 1006 / 0.0 T-complex protein 1 alpha subunit (.1) Potri.006G128600 [exp] 277 / 3e-86 AT5G20890 904 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.001G341100 [exp] 276 / 5e-86 AT5G20890 944 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.018G138200 [exp] 249 / 1e-75 AT5G26360 1029 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.T046300 [exp] 249 / 2e-75 AT5G26360 1030 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.012G051300 [exp] 242 / 4e-73 AT3G18190 942 / 0.0 TCP-1/cpn60 chaperonin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00118 [flax] [poplar] Cpn60_TCP1 TCP-1/cpn60 chaperonin family
Representative CDS sequence Show only first row Show all	>Lus10008406 pacid=23163471 polypeptide=Lus10008406 locus=Lus10008406.g ID=Lus10008406.BGIv1.0 annot-version=v1.0 ATGTCGTCCATGATGCAACCACAGATCATACTGTTGAAGGAAGGGACTGACACTTCACAAGGTAAGGCGCAGCTCGTCAGCAACATCAACGCCTGTACAG CAGTCGCCGATGTAGTCAGGACGACGCTCGGCCCTAGAGGTATGGACAAGCTGATTCACGACGATAAGGGAAGTGTAACCATCTCTAACGATGGGGCAAC TATCATGAAGCTGCTTGACATTGTCCATCCTGCTGCTAAGATCCTCGTCGACATTGCCAAGTCTCAGGATTCGGAGGTTGGTGATGGAACCACAACAGTT GTTCTTTTAGCAGCAGAGTTCTTAAGGGAGGCCAAACCTTTTATTGAAGATGGAGTCCATCCGCAAAACTTGATACGTAGTTATAGAACTGCCTGCAATT TGGCAATCGAGAAAGTCAAGGATTTGGCAATGAGCATAGAAGGGAAGAGTTTGGAGGAAAAGAAAAGCTTACTTGCTAAATGTGCAGCTACCACTCTGAG TTCAAAGCTCATAGGTGGAGAGAAGGAGTTCTTCTCATCGATGGTTGTGGATGCTGTCATTGCAATTGGAACTGACGACAGGCTAAATATGATAGGCATT AAGAAGGTTCAAGGTGGTAATATGCGAGATTCATTCCTAGTTGATGGTGTTGCCTTCAAGAAGACATTTTCTTATGCTGGTTTTGAACAGCAACCAAAGA AGTTTCTGAATCCAAAGATCTTGCTACTGAACATTGAATTGGAGCTGAAATCTGAGAAAGAAAATGCAGAGATAAGGCTCTCAGACCCGTCACAATATCA GTCAATTGTTGATGCGGAATGGAATATCATATATGAGAAATTGGATCGATGTGTTCAAAGTGGTGCTAAAGTGGTTCTCTCACGTCTAGCTATTGGTGAT CTAGCAACACAGTATTTTGCTGATCGGGACATTTTCTGTGCTGGCCGTGTTGCTGAAGAGGATCTACAAAGGGTTGCTGCAGCAACTGGGGGGACTGTAC AAACCACTGTCAACAATGTGATTGATGAGGTGCTTGGGACATGTGAGCTGTTTGAGGAAAAGCAAGTTGGAAATGAAAGGTTCAATATATTCAGTGGATG CCCTTCTGGATTGACTGCAACAATAGTTCTGCGTGGCGGTGCTGATCAGTTCATTGAGGAGGCGGAAAGGAGTTTACATGATGCAATCATGATAGTCAGA AGGGCTTTGAAGAACTCAACAGTAGTACCTGGCGGTGGTGCTATAGATATGGAGATAAGTCGATACCTGAGGCAACATGCTCGTACCATAGCTGGAAAGT CCCAGCTCTTCATCAATTCTTATGCGAAAGCTCTTGAGGTTATCCCTCGGCAATTATGTGACAATGCAGGGTTTGATGCTACTGATGTGTTGAACAAATT GAGACAGAAGCATGCTCTTCCATCTGGCGAAGGTGCACCTTTTGGGGTGGACATCAATACTGGCGGAATTGCCGATTCATTTGCGAACTTTGTGTGGGAG CCAGCTGTTGTCAAGATCAATGCTATCAATGCTGCTACCGAGGCTGCTTGCCTTGTTCTAAGCGTCGACGAGACTGTGAAGAACCCCAAGTCGGAAAGTG CTCAGGGAGAAGCCGCTGCTGGCGCTATGGGTGGCCGAGGCCGTGGTAGAGGACGAGGAATGAGAAGGCGATGA
AA sequence Show only first row Show all	>Lus10008406 pacid=23163471 polypeptide=Lus10008406 locus=Lus10008406.g ID=Lus10008406.BGIv1.0 annot-version=v1.0 MSSMMQPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRTTLGPRGMDKLIHDDKGSVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTV VLLAAEFLREAKPFIEDGVHPQNLIRSYRTACNLAIEKVKDLAMSIEGKSLEEKKSLLAKCAATTLSSKLIGGEKEFFSSMVVDAVIAIGTDDRLNMIGI KKVQGGNMRDSFLVDGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYEKLDRCVQSGAKVVLSRLAIGD LATQYFADRDIFCAGRVAEEDLQRVAAATGGTVQTTVNNVIDEVLGTCELFEEKQVGNERFNIFSGCPSGLTATIVLRGGADQFIEEAERSLHDAIMIVR RALKNSTVVPGGGAIDMEISRYLRQHARTIAGKSQLFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPSGEGAPFGVDINTGGIADSFANFVWE PAVVKINAINAATEAACLVLSVDETVKNPKSESAQGEAAAGAMGGRGRGRGRGMRRR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11830			TCP-1/cpn60 chaperonin family ...		Lus10008406 [exp]	0	1
AT5G25757			RNA polymerase I-associated fa...		Lus10038622 [exp]	1.0	0.9743
AT3G03960			TCP-1/cpn60 chaperonin family ...		Lus10010670 [exp]	1.4	0.9661
AT3G11830			TCP-1/cpn60 chaperonin family ...		Lus10026773 [exp]	2.8	0.9628
AT3G03130			unknown protein		Lus10009977 [exp]	3.9	0.9643
AT5G14520			pescadillo-related (.1)		Lus10000618 [exp]	4.5	0.9603
AT1G80410		OMA, EMB2753	OMISHA, EMBRYO DEFECTIVE 2753,...		Lus10023111 [exp]	4.9	0.9586
AT1G80410		OMA, EMB2753	OMISHA, EMBRYO DEFECTIVE 2753,...		Lus10011474 [exp]	5.3	0.9581
AT5G20890			TCP-1/cpn60 chaperonin family ...		Lus10014511 [exp]	5.5	0.9500
AT1G59760		AtMTR4	homolog of yeast MTR4, RNA hel...		Lus10024454 [exp]	6.5	0.9362
AT5G06680		ATSPC98, SPC98,...	ARABIDOPSIS THALIANA GAMMA TUB...		Lus10029296 [exp]	8.1	0.9130

Compare expression of checked genes

Lus10008406 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.