Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17770 427 / 3e-152 CBR1, ATCBR NADH:cytochrome B5 reductase 1 (.1) AT5G20080 214 / 7e-68 FAD/NAD(P)-binding oxidoreductase (.1) AT1G37130 176 / 2e-49 NIA2-1, CHL3, B29, NR2, NIA2, ATNR2 CHLORATE RESISTANT 3, ARABIDOPSIS NITRATE REDUCTASE 2, nitrate reductase 2 (.1) AT1G77760 173 / 1e-48 GNR1, NIA1 nitrate reductase 1 (.1) AT1G15140 43 / 0.0001 FAD/NAD(P)-binding oxidoreductase (.1), FAD/NAD(P)-binding oxidoreductase (.2), FAD/NAD(P)-binding oxidoreductase (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026774 [exp] 558 / 0 AT5G17770 425 / 1e-151 NADH:cytochrome B5 reductase 1 (.1) Lus10020310 [exp] 444 / 1e-158 AT5G17770 474 / 5e-171 NADH:cytochrome B5 reductase 1 (.1) Lus10005682 [exp] 436 / 1e-155 AT5G17770 474 / 6e-171 NADH:cytochrome B5 reductase 1 (.1) Lus10033405 [exp] 389 / 4e-137 AT5G17770 359 / 2e-125 NADH:cytochrome B5 reductase 1 (.1) Lus10034869 [exp] 303 / 3e-103 AT5G17770 280 / 3e-94 NADH:cytochrome B5 reductase 1 (.1) Lus10014491 [exp] 212 / 2e-67 AT5G20080 475 / 1e-170 FAD/NAD(P)-binding oxidoreductase (.1) Lus10030059 [exp] 211 / 2e-66 AT5G20080 516 / 0.0 FAD/NAD(P)-binding oxidoreductase (.1) Lus10038977 [exp] 181 / 2e-51 AT1G77760 1397 / 0.0 nitrate reductase 1 (.1) Lus10027270 [exp] 179 / 2e-50 AT1G77760 1380 / 0.0 nitrate reductase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G157000 [exp] 487 / 8e-176 AT5G17770 421 / 3e-150 NADH:cytochrome B5 reductase 1 (.1) Potri.004G194400 [exp] 480 / 4e-173 AT5G17770 428 / 4e-153 NADH:cytochrome B5 reductase 1 (.1) Potri.013G067300 [exp] 417 / 3e-148 AT5G17770 461 / 6e-166 NADH:cytochrome B5 reductase 1 (.1) Potri.010G246800 [exp] 397 / 3e-140 AT5G17770 379 / 1e-133 NADH:cytochrome B5 reductase 1 (.1) Potri.006G218600 [exp] 223 / 2e-71 AT5G20080 511 / 0.0 FAD/NAD(P)-binding oxidoreductase (.1) Potri.002G088600 [exp] 177 / 4e-50 AT1G77760 1394 / 0.0 nitrate reductase 1 (.1) Potri.005G172400 [exp] 176 / 9e-50 AT1G37130 1400 / 0.0 CHLORATE RESISTANT 3, ARABIDOPSIS NITRATE REDUCTASE 2, nitrate reductase 2 (.1) Potri.015G068500 [exp] 85 / 1e-20 AT5G17770 104 / 1e-28 NADH:cytochrome B5 reductase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0076 [flax] [poplar] FAD_Lum_binding PF00970 [flax] [poplar] FAD_binding_6 Oxidoreductase FAD-binding domain CL0091 [flax] [poplar] NAD_Ferredoxin PF00175 [flax] [poplar] NAD_binding_1 Oxidoreductase NAD-binding domain
Representative CDS sequence Show only first row Show all	>Lus10008407 pacid=23163485 polypeptide=Lus10008407 locus=Lus10008407.g ID=Lus10008407.BGIv1.0 annot-version=v1.0 ATGGACGCCTTGCAATCCCGCAGAACCGAAGTGATTAGCATCGCCGTTGCCCTAGTCGCCATCGGCGCCGGCACTGCCTACTATTTCTACCTCACCAGGA AACCCAAACCAGCTAAAGCTGAACTTAAGGTTCCATTGATATCTGTTTTGCTGACACATTTGGCATTGTCTCTGGCAGCCTGCCTGGACCCAGAAAACTT CAAGGAGTTTAAGCTTGTTAAGCGTACAGAACTCAGCCACAATGTTGCCAAGTTTCGGTTCGAGCTTCCAACTCTTGACTCGGTTCTAGGATTGCCAATT GGACAGCACATGAGTTGCAGAGGGAAAGACGGCGTAGGAGAAGATGTCGTTAAGCCATATACTCCGACAACTTTGGACTCTGATGTTGGCTACTTTGATT TAGTGATAAAGATGTATCCACAAGGGCGAATGTCTCACCATTTCCGAGAATTGCATGAAGGTGACTACTTGTCTGTGAAGGGGCCCAAGGGGCGCTTCAA ATATCAACCCAACCAAGTGAGAGCATTCGGGATGCTTGCCGGAGGCACCGGCATCACTCCAATGTTCCAAGTTACCAGAGCCATATTGGAGAACCCAAAA GACAAAACCAACGTTAATCTTATCTATGCCAATGTCACATCCGACGACATCCTATTGAAGGAAGAGCTAGATAATCTCGTCGCAAGTTTCCCTGACCGCT TCAAGGTGTACTACGTTCTAAATCAGCCACCGGAAGGATGGAATGGTGGTGTCGGGTTTGTAACAAAAGAAATGATTGAGACAAACTGCCCCTCACCAGC ACCAGATGTTCAGATATTGAGGTGCGGGCCACCACCGATGAACAAGGCTATGGCTGGTCACCTAGAAGCTCTGGGATACACTCCCCAAATGCAGTTCCAG TTTTGA
AA sequence Show only first row Show all	>Lus10008407 pacid=23163485 polypeptide=Lus10008407 locus=Lus10008407.g ID=Lus10008407.BGIv1.0 annot-version=v1.0 MDALQSRRTEVISIAVALVAIGAGTAYYFYLTRKPKPAKAELKVPLISVLLTHLALSLAACLDPENFKEFKLVKRTELSHNVAKFRFELPTLDSVLGLPI GQHMSCRGKDGVGEDVVKPYTPTTLDSDVGYFDLVIKMYPQGRMSHHFRELHEGDYLSVKGPKGRFKYQPNQVRAFGMLAGGTGITPMFQVTRAILENPK DKTNVNLIYANVTSDDILLKEELDNLVASFPDRFKVYYVLNQPPEGWNGGVGFVTKEMIETNCPSPAPDVQILRCGPPPMNKAMAGHLEALGYTPQMQFQ F

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Lus10008407 [exp]	0	1
AT2G42520			P-loop containing nucleoside t...		Lus10000849 [exp]	1.4	0.8966
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Lus10026774 [exp]	1.4	0.8981
AT2G16595			Translocon-associated protein ...		Lus10012169 [exp]	3.5	0.8567
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10014853 [exp]	3.9	0.8476
AT3G25500		AHF1, AFH1, ATF...	ARABIDOPSIS THALIANA FORMIN HO...		Lus10002149 [exp]	4.2	0.8655
AT5G03340			ATPase, AAA-type, CDC48 protei...		Lus10016123 [exp]	6.9	0.8457
AT4G07960		ATCSLC12	CELLULOSE-SYNTHASE LIKE C12, C...		Lus10018651 [exp]	8.8	0.8448
AT4G13870		WRNEXO, ATWRNEX...	Werner syndrome-like exonuclea...		Lus10022556 [exp]	9.4	0.8313
AT5G67470		ATFH6	ARABIDOPSIS FORMIN HOMOLOG 6, ...		Lus10008739 [exp]	10.4	0.8352
AT5G19980		GONST4	golgi nucleotide sugar transpo...		Lus10017759 [exp]	11.0	0.8338

Compare expression of checked genes

Lus10008407 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.