Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34790 165 / 2e-48 MEE23, EDA28 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) AT5G44400 159 / 8e-46 FAD-binding Berberine family protein (.1) AT1G30760 156 / 7e-45 FAD-binding Berberine family protein (.1) AT5G44360 151 / 3e-43 FAD-binding Berberine family protein (.1) AT5G44390 148 / 9e-42 FAD-binding Berberine family protein (.1) AT5G44380 147 / 1e-41 FAD-binding Berberine family protein (.1) AT5G44440 146 / 3e-41 FAD-binding Berberine family protein (.1) AT4G20860 141 / 2e-39 FAD-binding Berberine family protein (.1) AT1G26390 140 / 7e-39 FAD-binding Berberine family protein (.1) AT5G44410 136 / 1e-37 FAD-binding Berberine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026775 [exp] 367 / 2e-126 AT5G44390 448 / 5e-153 FAD-binding Berberine family protein (.1) Lus10001965 [exp] 294 / 6e-98 AT5G44390 454 / 2e-155 FAD-binding Berberine family protein (.1) Lus10008410 [exp] 281 / 2e-93 AT5G44390 436 / 8e-149 FAD-binding Berberine family protein (.1) Lus10039682 [exp] 187 / 3e-56 AT5G44440 481 / 9e-166 FAD-binding Berberine family protein (.1) Lus10038436 [exp] 184 / 3e-55 AT4G20820 508 / 1e-176 FAD-binding Berberine family protein (.1) Lus10032943 [exp] 175 / 7e-52 AT4G20820 503 / 2e-174 FAD-binding Berberine family protein (.1) Lus10012641 [exp] 172 / 5e-51 AT5G44440 518 / 2e-180 FAD-binding Berberine family protein (.1) Lus10038445 [exp] 164 / 3e-48 AT1G30760 415 / 6e-141 FAD-binding Berberine family protein (.1) Lus10023361 [exp] 161 / 1e-46 AT2G34790 674 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G162666 [exp] 207 / 4e-64 AT5G44440 506 / 6e-176 FAD-binding Berberine family protein (.1) Potri.001G440700 [exp] 206 / 8e-64 AT4G20820 552 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162828 [exp] 195 / 1e-59 AT5G44440 521 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162884 [exp] 194 / 2e-59 AT4G20820 527 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162900 [exp] 193 / 4e-59 AT4G20820 526 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G461900 [exp] 192 / 2e-58 AT4G20820 545 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162968 [exp] 191 / 4e-58 AT4G20820 525 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158100 [exp] 189 / 2e-57 AT5G44440 519 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G461700 [exp] 187 / 8e-57 AT4G20820 545 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G462000 [exp] 183 / 3e-55 AT5G44440 520 / 0.0 FAD-binding Berberine family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008408 pacid=23163511 polypeptide=Lus10008408 locus=Lus10008408.g ID=Lus10008408.BGIv1.0 annot-version=v1.0 ATGCAGCTCCCCGACGATGTCTTCTCCAGTGTAACTATAACGAGCGGTCAAGCTTCCTTCAGTACTCTGTTTCTGGATGGAACAGAGCACCTGATTCCGA TAATGGACAACAAATTTCTAGAACTGGGTTTGAAGAGAGAGAACTGCTTAAAAACGAGCTGGGCGAGGTCGAATCTCTACTTGCTCGGATTCCCACTGGA CACCCCGCTCGAGACCTTACTCGACAGAACAGCCTCGCCGATAGTGTGGGGGAACTTGAAAGGGAAGTCGGACTACGTGAAAGACCCGATTCCGATCAGC GGGTTGGAAGGGATTTGGGGGAAGCTAAAGGAGGTTGATGCTAGTACGACCATGTTGGTAATGGAGTCTTATGGAGGGAAGATGAAGGAAATTTCTGAAT CGAGCATTTCATTCCCTCACAGAAATGGGGTTATCTACCAACTGCAAGAATTAACGTTCTGGGTGGAAGGCGGCCAAGTGGCTGCCGATAGGCAAATCAG TTGGCTGAGAGGGCTGTATGATTACATGACTCCTTATGTCTCGAAGAATCCTCGAGAAGCTTATGTCGACTACTCGGATATTGGGACTAACAGCGGCGGG GAGTTGGGGTTTGAGGTATTATAA
AA sequence Show only first row Show all	>Lus10008408 pacid=23163511 polypeptide=Lus10008408 locus=Lus10008408.g ID=Lus10008408.BGIv1.0 annot-version=v1.0 MQLPDDVFSSVTITSGQASFSTLFLDGTEHLIPIMDNKFLELGLKRENCLKTSWARSNLYLLGFPLDTPLETLLDRTASPIVWGNLKGKSDYVKDPIPIS GLEGIWGKLKEVDASTTMLVMESYGGKMKEISESSISFPHRNGVIYQLQELTFWVEGGQVAADRQISWLRGLYDYMTPYVSKNPREAYVDYSDIGTNSGG ELGFEVL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34790		MEE23, EDA28	MATERNAL EFFECT EMBRYO ARREST ...		Lus10008408 [exp]	0	1
					Lus10022836 [exp]	6.6	0.7355
AT4G12480		PEARLI 1 1, PEA...	EARLY ARABIDOPSIS ALUMINUM IND...		Lus10036494 [exp]	6.9	0.7284
AT1G07360	C3HZnF	MAC5A	MOS4-associated complex subuni...		Lus10012448 [exp]	8.5	0.6970
AT1G66980		GDPDL2, SNC4	Glycerophosphodiester phosphod...		Lus10025549 [exp]	9.8	0.6395
AT4G39050			Kinesin motor family protein (...		Lus10017906 [exp]	14.7	0.6506
AT3G06240			F-box family protein (.1)		Lus10011015 [exp]	15.9	0.6605
AT4G19770			Glycosyl hydrolase family prot...		Lus10003408 [exp]	17.3	0.6747
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10031236 [exp]	20.1	0.6528
AT5G48540			receptor-like protein kinase-r...		Lus10035754 [exp]	21.2	0.6475
AT1G14930			Polyketide cyclase/dehydrase a...		Lus10042490 [exp]	31.8	0.6762

Compare expression of checked genes

Lus10008408 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.