Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26380 42 / 8e-05 FAD-binding Berberine family protein (.1) AT5G44410 41 / 0.0001 FAD-binding Berberine family protein (.1) AT1G26400 39 / 0.0007 FAD-binding Berberine family protein (.1) AT4G20820 39 / 0.0008 FAD-binding Berberine family protein (.1) AT1G26390 0 / 1 FAD-binding Berberine family protein (.1) AT1G26420 0 / 1 FAD-binding Berberine family protein (.1) AT1G30730 0 / 1 FAD-binding Berberine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026775 [exp] 68 / 5e-14 AT5G44390 448 / 5e-153 FAD-binding Berberine family protein (.1) Lus10008410 [exp] 66 / 3e-13 AT5G44390 436 / 8e-149 FAD-binding Berberine family protein (.1) Lus10001965 [exp] 46 / 2e-06 AT5G44390 454 / 2e-155 FAD-binding Berberine family protein (.1) Lus10012641 [exp] 42 / 9e-05 AT5G44440 518 / 2e-180 FAD-binding Berberine family protein (.1) Lus10039682 [exp] 39 / 0.001 AT5G44440 481 / 9e-166 FAD-binding Berberine family protein (.1) Lus10032943 [exp] 0 / 1 AT4G20820 503 / 2e-174 FAD-binding Berberine family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G162940 [exp] 44 / 2e-05 AT5G44440 543 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G163232 [exp] 44 / 2e-05 AT5G44440 536 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162856 [exp] 44 / 2e-05 AT5G44440 545 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162800 [exp] 44 / 2e-05 AT5G44440 540 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G163000 [exp] 44 / 2e-05 AT4G20820 532 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162916 [exp] 44 / 2e-05 AT4G20820 532 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G464700 [exp] 42 / 7e-05 AT5G44440 484 / 4e-167 FAD-binding Berberine family protein (.1) Potri.011G157900 [exp] 41 / 0.0001 AT5G44440 546 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G440700 [exp] 41 / 0.0001 AT4G20820 552 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G461700 [exp] 40 / 0.0002 AT4G20820 545 / 0.0 FAD-binding Berberine family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008409 pacid=23163510 polypeptide=Lus10008409 locus=Lus10008409.g ID=Lus10008409.BGIv1.0 annot-version=v1.0 ATGGCAGGGTCAAAACAACCGCCTCCTTCAAACCATCCATCATTGTCGCTCCATATTCCATCCCCCAAATCCAGGCCACAATCAATTGCTCCACAACCCA CAATCTCCAGATCAGAACCCGAAGCAGCGGCCACGACTTCGAAGGCCTATCCTACACCTCCTCTCCTCAAGTATGCCATTTTTAGTCTTATATATATGCT TCTTGCTCCTCGATCTCATCCACTTTCGAACATTACGATTGATGATCACAACTCGACGGCATGGATTCAGCCTGCGGTAACTACAGGGAAGCTTTACTAC GTGCTTCATGAGGTGAGTCCCACTCTAGCTTTCCTTCTGCGATTTGTCCGACTGTGGGGCTCGGCGATCATATCAGCGGCGGAGGGTGGGGGACTCTGCT CCGGAAGTACGGACTGGCTGCGGATAACGCGGTGGATTCGAATTTGA
AA sequence Show only first row Show all	>Lus10008409 pacid=23163510 polypeptide=Lus10008409 locus=Lus10008409.g ID=Lus10008409.BGIv1.0 annot-version=v1.0 MAGSKQPPPSNHPSLSLHIPSPKSRPQSIAPQPTISRSEPEAAATTSKAYPTPPLLKYAIFSLIYMLLAPRSHPLSNITIDDHNSTAWIQPAVTTGKLYY VLHEVSPTLAFLLRFVRLWGSAIISAAEGGGLCSGSTDWLRITRWIRI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10008409 [exp]	0	1
					Lus10030762 [exp]	1.4	0.9855
AT3G06530			ARM repeat superfamily protein...		Lus10026144 [exp]	2.0	0.9748
AT1G06460		ACD31.2, ACD32....	ALPHA-CRYSTALLIN DOMAIN 31.2, ...		Lus10020785 [exp]	2.2	0.9592
					Lus10018996 [exp]	3.0	0.9699
AT3G16360		AHP4	HPT phosphotransmitter 4 (.1.2...		Lus10025821 [exp]	3.5	0.9520
AT1G65480		FT	FLOWERING LOCUS T, PEBP (phosp...		Lus10004452 [exp]	3.5	0.9616
AT5G20060			alpha/beta-Hydrolases superfam...		Lus10008078 [exp]	4.1	0.9089
AT5G50790		SWEET10, AtSWEE...	Nodulin MtN3 family protein (....		Lus10008861 [exp]	4.9	0.9494
AT5G41850			alpha/beta-Hydrolases superfam...		Lus10023100 [exp]	7.9	0.9363
AT5G58850	MYB	ATMYB119	myb domain protein 119 (.1)		Lus10018220 [exp]	8.8	0.9516

Compare expression of checked genes

Lus10008409 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.