Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20820 410 / 8e-139 FAD-binding Berberine family protein (.1) AT5G44440 408 / 3e-138 FAD-binding Berberine family protein (.1) AT5G44410 400 / 3e-135 FAD-binding Berberine family protein (.1) AT5G44380 400 / 5e-135 FAD-binding Berberine family protein (.1) AT1G30760 399 / 8e-135 FAD-binding Berberine family protein (.1) AT5G44400 391 / 2e-131 FAD-binding Berberine family protein (.1) AT5G44390 391 / 2e-131 FAD-binding Berberine family protein (.1) AT1G30700 391 / 2e-131 FAD-binding Berberine family protein (.1) AT2G34790 388 / 3e-130 MEE23, EDA28 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) AT1G11770 385 / 3e-129 FAD-binding Berberine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026775 [exp] 755 / 0 AT5G44390 448 / 5e-153 FAD-binding Berberine family protein (.1) Lus10001965 [exp] 670 / 0 AT5G44390 454 / 2e-155 FAD-binding Berberine family protein (.1) Lus10032943 [exp] 513 / 3e-179 AT4G20820 503 / 2e-174 FAD-binding Berberine family protein (.1) Lus10038436 [exp] 478 / 1e-165 AT4G20820 508 / 1e-176 FAD-binding Berberine family protein (.1) Lus10039682 [exp] 474 / 7e-164 AT5G44440 481 / 9e-166 FAD-binding Berberine family protein (.1) Lus10012641 [exp] 450 / 2e-154 AT5G44440 518 / 2e-180 FAD-binding Berberine family protein (.1) Lus10023361 [exp] 436 / 1e-148 AT2G34790 674 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10023363 [exp] 417 / 3e-142 AT2G34790 504 / 1e-175 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10038439 [exp] 416 / 2e-141 AT1G30700 540 / 0.0 FAD-binding Berberine family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G440700 [exp] 530 / 0 AT4G20820 552 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G461900 [exp] 513 / 2e-179 AT4G20820 545 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G461800 [exp] 509 / 5e-178 AT5G44440 516 / 1e-179 FAD-binding Berberine family protein (.1) Potri.001G461500 [exp] 508 / 2e-177 AT4G20820 519 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158100 [exp] 507 / 5e-177 AT5G44440 519 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G461700 [exp] 507 / 6e-177 AT4G20820 545 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162732 [exp] 507 / 6e-177 AT4G20820 534 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G163000 [exp] 504 / 9e-176 AT4G20820 532 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G462100 [exp] 504 / 9e-176 AT4G20820 521 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162916 [exp] 504 / 1e-175 AT4G20820 532 / 0.0 FAD-binding Berberine family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [flax] [poplar] FAD_PCMH PF01565 [flax] [poplar] FAD_binding_4 FAD binding domain CL0277 [flax] [poplar] FAD-oxidase_C PF08031 [flax] [poplar] BBE Berberine and berberine like
Representative CDS sequence Show only first row Show all	>Lus10008410 pacid=23163496 polypeptide=Lus10008410 locus=Lus10008410.g ID=Lus10008410.BGIv1.0 annot-version=v1.0 ATGAACTCAACCTACAGCTCAGTCCTCAAATACTCCATCAAGAACGGCCGGTTCAACACAACCGCCACCTTCAAGCCATCATTCATCGTCACTCCAGACT CCATTCCCCAAATCCAATCCACAGTCAAATGCTCGAAAAGCCACGACCTTCAGATCAGAATCCGTAGTGGCGGCCACGACTTCGAAGGCCTATCCTACAC CTCTCCTAAAGGTATCAGCTCCTCCTCCAGCTTTCTGCTCCTCGATCTCATCCGCTTCAGGAACATTACAATTGATGATCACCACTCGACGGCTTGGGTT CAGGCTGCCGTAACTGCCGGGGAGCTTTACTACAAGCTTCATGAGGTGAGTCCCACTCTAGCTTTCCCTTCCGGGATTTGTCCGACTATAGGCCTCGGCG GTCAGATCAGTGGTGGTGGGTATGGGACTCTGGTCCGGAAGTACGGACTATCGGGGGATAACGTGGTGGACGCTCAATTGATCGACGCGAAAGGGAGGTT TCTCGACAGAGCTTCCATGGGGGAGGATCTGTTCTGGGCTATCCGAGGCGGGGGAGGTAACACATTTGGGGTCGTCGTCGCCTGGAAAATTAAGCTTGTC AAGGTGCCGGCGAACGTGACGGTCTGCAATGTTGTCAAAACTTTGGAGCAGAACGCAACAGAGATTTTCCACCGGTGGCAGTACGTCATCGATAAGAAGC TCCCGAACGGGGTGTTCTCCCATGTTGTTCTAACCAGCGGTCAAGCTTCCTTCAATACCATGTTTCTCGGTGGAATAAAGTCCCTGATTCCGATAATGGA TAAGAAATTTCCAGAACTGGGTTTGAAGGGAGAGAACTGCGTAGAAACGAGCTGGGCGATGTCGAATCTCTACTTGCTCGGATTCCCACTGGACACCCCG CTCGAGAGCTTACTCGACAGAACAACCTTGTCGATAGGGTTGGCGAACTTCAAATCAAAGTCGGACTACGTGAAAGACCCGATTCCGATTAGCGGGTTGA AAGGAATTTGGGCGAAGCTAAAGGAGGTGGGTGCTGGGAGGGCCGCTTTGCTAATGGAGTCATTCGGAGGGAGGATGCACCAAATGTCCGAATCGAGCAT TCCATTCCCGCACAGAGATGCCATCTACCAAGTGCAGGAAACGACGTTGTGGGCGGAGGACAATGAAGTGGTTGCCGATAGGCAAATCAATTGGGTGAAA GAGTTGTATAATTACATGACTCCCTATGTTTCGAAGAATCCTCGAGAAGCTTATGTGAACTATAGAGATTTGGATATTGGGACCAACGGCGACGGCGGAG GTAGCCGTTGGGAAAATTACCTGATGGCGAAGAGTTGGGGTTTAAAGTATTTCAAAGGTAACTTTGATAGATTGGTGGATGTAAAAACTGCGGTGGATCC TGATAATTTCTTCAGGAATGAACAGAGCATTCCGCCTCTCTGA
AA sequence Show only first row Show all	>Lus10008410 pacid=23163496 polypeptide=Lus10008410 locus=Lus10008410.g ID=Lus10008410.BGIv1.0 annot-version=v1.0 MNSTYSSVLKYSIKNGRFNTTATFKPSFIVTPDSIPQIQSTVKCSKSHDLQIRIRSGGHDFEGLSYTSPKGISSSSSFLLLDLIRFRNITIDDHHSTAWV QAAVTAGELYYKLHEVSPTLAFPSGICPTIGLGGQISGGGYGTLVRKYGLSGDNVVDAQLIDAKGRFLDRASMGEDLFWAIRGGGGNTFGVVVAWKIKLV KVPANVTVCNVVKTLEQNATEIFHRWQYVIDKKLPNGVFSHVVLTSGQASFNTMFLGGIKSLIPIMDKKFPELGLKGENCVETSWAMSNLYLLGFPLDTP LESLLDRTTLSIGLANFKSKSDYVKDPIPISGLKGIWAKLKEVGAGRAALLMESFGGRMHQMSESSIPFPHRDAIYQVQETTLWAEDNEVVADRQINWVK ELYNYMTPYVSKNPREAYVNYRDLDIGTNGDGGGSRWENYLMAKSWGLKYFKGNFDRLVDVKTAVDPDNFFRNEQSIPPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44390			FAD-binding Berberine family p...		Lus10008410 [exp]	0	1
AT3G22800			Leucine-rich repeat (LRR) fami...		Lus10041190 [exp]	2.0	0.9232
AT4G11650		ATOSM34	osmotin 34 (.1)		Lus10024511 [exp]	5.0	0.9440
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10019183 [exp]	6.9	0.9305
AT4G16260			Glycosyl hydrolase superfamily...		Lus10016883 [exp]	7.1	0.9250
AT4G16260			Glycosyl hydrolase superfamily...		Lus10037749 [exp]	8.1	0.9199
AT4G26200		ACS7, ATACS7	1-amino-cyclopropane-1-carboxy...		Lus10008579 [exp]	8.7	0.8930
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10035629 [exp]	8.8	0.9023
AT1G22430			GroES-like zinc-binding dehydr...		Lus10004785 [exp]	9.5	0.9136
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10022892 [exp]	12.0	0.8837
AT1G22430			GroES-like zinc-binding dehydr...		Lus10005656 [exp]	12.0	0.9111

Compare expression of checked genes

Lus10008410 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.