Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21530 146 / 1e-43 FHA SMAD/FHA domain-containing protein (.1) AT4G14490 45 / 1e-05 FHA SMAD/FHA domain-containing protein (.1) AT5G67030 45 / 3e-05 NPQ2, LOS6, IBS3, ATZEP, ATABA1, ABA1 NON-PHOTOCHEMICAL QUENCHING 2, IMPAIRED IN BABA-INDUCED STERILITY 3, ARABIDOPSIS THALIANA ZEAXANTHIN EPOXIDASE, ARABIDOPSIS THALIANA ABA DEFICIENT 1, ABA DEFICIENT 1, zeaxanthin epoxidase (ZEP) (ABA1) (.1), zeaxanthin epoxidase (ZEP) (ABA1) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001966 [exp] 297 / 1e-102 AT2G21530 152 / 4e-46 SMAD/FHA domain-containing protein (.1) Lus10019342 [exp] 45 / 2e-05 AT5G67030 852 / 0.0 NON-PHOTOCHEMICAL QUENCHING 2, IMPAIRED IN BABA-INDUCED STERILITY 3, ARABIDOPSIS THALIANA ZEAXANTHIN EPOXIDASE, ARABIDOPSIS THALIANA ABA DEFICIENT 1, ABA DEFICIENT 1, zeaxanthin epoxidase (ZEP) (ABA1) (.1), zeaxanthin epoxidase (ZEP) (ABA1) (.2) Lus10042052 [exp] 44 / 6e-05 AT3G02400 126 / 3e-33 SMAD/FHA domain-containing protein (.1) Lus10018056 [exp] 43 / 0.0001 AT3G02400 155 / 1e-43 SMAD/FHA domain-containing protein (.1) Lus10031083 [exp] 42 / 0.0002 AT4G14490 159 / 1e-45 SMAD/FHA domain-containing protein (.1) Lus10034354 [exp] 41 / 0.0006 AT5G38840 629 / 0.0 SMAD/FHA domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G156900 [exp] 180 / 6e-57 AT2G21530 146 / 5e-44 SMAD/FHA domain-containing protein (.1) Potri.009G156700 [exp] 156 / 6e-48 AT2G21530 135 / 4e-40 SMAD/FHA domain-containing protein (.1) Potri.005G138400 [exp] 45 / 2e-05 AT5G67030 925 / 0.0 NON-PHOTOCHEMICAL QUENCHING 2, IMPAIRED IN BABA-INDUCED STERILITY 3, ARABIDOPSIS THALIANA ZEAXANTHIN EPOXIDASE, ARABIDOPSIS THALIANA ABA DEFICIENT 1, ABA DEFICIENT 1, zeaxanthin epoxidase (ZEP) (ABA1) (.1), zeaxanthin epoxidase (ZEP) (ABA1) (.2) Potri.004G111500 [exp] 44 / 5e-05 AT5G38840 342 / 1e-106 SMAD/FHA domain-containing protein (.1) Potri.007G044300 [exp] 42 / 0.0002 AT5G67030 919 / 0.0 NON-PHOTOCHEMICAL QUENCHING 2, IMPAIRED IN BABA-INDUCED STERILITY 3, ARABIDOPSIS THALIANA ZEAXANTHIN EPOXIDASE, ARABIDOPSIS THALIANA ABA DEFICIENT 1, ABA DEFICIENT 1, zeaxanthin epoxidase (ZEP) (ABA1) (.1), zeaxanthin epoxidase (ZEP) (ABA1) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0357 [flax] [poplar] SMAD-FHA PF00498 [flax] [poplar] FHA FHA domain
Representative CDS sequence Show only first row Show all	>Lus10008411 pacid=23163489 polypeptide=Lus10008411 locus=Lus10008411.g ID=Lus10008411.BGIv1.0 annot-version=v1.0 ATGGAAGCAGCAATAGGAACCCACCAGTTTTTACATCACTGCAACTACTCAACAGCAAAGCCATCATCATCATCTGTTGTGGCTTCTTCGGTATCAATCC TCCCTTTCAAACTCTGCACCAGTTTCTTCAGTCAAGGACTTATTATAAACCAGAGTAAAAAGCTGCGTACTGGGTCTCATCTAATAGTTCAAGCTTCTTC TTCTTCATCATCAACTGGAAGCACAACCACAACTGCTGCTACTGTTCAAGATAGGTGGATTCTTGCTCCTGTGGGAGATGGAGATTGGAGGCACATAGGG TTTCAGGTTAAGATGCCTGGTGCCTTTGAAATCGCTTCTAATGAGGTGACAGTGGGACGAGTTGCAGAGAAAGCTGACATGGTGATTCCAGTTGCTACAG TGTCTGGAGTGCATGCCAAGATCCAGAAGAAGGGAGGCAACCTGGTGGTAACTGATTTGGACAGTACAAACGGCACCTTCATTGGCAAAAGCCGCCTCAA ACCTGGTCTCCCTTACACTCTTACTTCCGGAAACTTCGTCATATTCGGGGACGTCCACCTGGCAATGTTTAGAGTATCGAAACTGGAGAATGTGGAAGTT GCGGGCACGTCCAGTAATGATTCTTCTTCTTCTGCAGAAGAAGAACCAGAAGAAATTGAGACCTCTGTGGAAGCTAGTAGTAGTAGCAGTTAG
AA sequence Show only first row Show all	>Lus10008411 pacid=23163489 polypeptide=Lus10008411 locus=Lus10008411.g ID=Lus10008411.BGIv1.0 annot-version=v1.0 MEAAIGTHQFLHHCNYSTAKPSSSSVVASSVSILPFKLCTSFFSQGLIINQSKKLRTGSHLIVQASSSSSSTGSTTTTAATVQDRWILAPVGDGDWRHIG FQVKMPGAFEIASNEVTVGRVAEKADMVIPVATVSGVHAKIQKKGGNLVVTDLDSTNGTFIGKSRLKPGLPYTLTSGNFVIFGDVHLAMFRVSKLENVEV AGTSSNDSSSSAEEEPEEIETSVEASSSSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21530	FHA		SMAD/FHA domain-containing pro...		Lus10008411 [exp]	0	1
AT2G21530	FHA		SMAD/FHA domain-containing pro...		Lus10001966 [exp]	1.4	0.9528
AT1G74880		NdhO, NDH-O	NADH dehydrogenase-like comple...		Lus10002095 [exp]	4.6	0.9270
AT4G18780		LEW2, IRX1, ATC...	LEAF WILTING 2, IRREGULAR XYLE...		Lus10022449 [exp]	5.5	0.9122
AT1G18730		PnsB4, NDF6	Photosynthetic NDH subcomplex...		Lus10001645 [exp]	7.6	0.9320
AT4G31560		HCF153	high chlorophyll fluorescence ...		Lus10039571 [exp]	8.8	0.8983
AT2G01870			unknown protein		Lus10009946 [exp]	8.8	0.9196
AT1G66130			NAD(P)-binding Rossmann-fold s...		Lus10002180 [exp]	10.0	0.9237
					Lus10001769 [exp]	12.0	0.9037
AT4G22890		PGR5-LIKEA, PGR...	PGR5-LIKE A (.1.2.3.4.5)		Lus10014135 [exp]	12.3	0.9253
AT3G05410			Photosystem II reaction center...		Lus10029903 [exp]	13.0	0.9180

Compare expression of checked genes

Lus10008411 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.