Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52200 717 / 0 LTA3 Dihydrolipoamide acetyltransferase, long form protein (.1.2) AT1G54220 322 / 6e-103 Dihydrolipoamide acetyltransferase, long form protein (.1.2) AT3G13930 320 / 4e-102 Dihydrolipoamide acetyltransferase, long form protein (.1) AT1G34430 157 / 1e-41 EMB3003 embryo defective 3003, 2-oxoacid dehydrogenases acyltransferase family protein (.1) AT3G06850 153 / 4e-40 DIN3, LTA1, BCE2 DARK INDUCIBLE 3, 2-oxoacid dehydrogenases acyltransferase family protein (.1.2) AT3G25860 124 / 4e-30 PLE2, LTA2 PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE, 2-oxoacid dehydrogenases acyltransferase family protein (.1) AT4G26910 121 / 6e-30 Dihydrolipoamide succinyltransferase (.1.2.3) AT5G55070 121 / 4e-29 Dihydrolipoamide succinyltransferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001967 [exp] 1122 / 0 AT3G52200 717 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Lus10006877 [exp] 329 / 2e-106 AT1G54220 704 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Lus10037617 [exp] 325 / 3e-103 AT1G54220 716 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Lus10043116 [exp] 142 / 2e-36 AT4G26910 638 / 0.0 Dihydrolipoamide succinyltransferase (.1.2.3) Lus10006498 [exp] 140 / 5e-35 AT3G06850 558 / 0.0 DARK INDUCIBLE 3, 2-oxoacid dehydrogenases acyltransferase family protein (.1.2) Lus10037492 [exp] 139 / 6e-35 AT3G06850 565 / 0.0 DARK INDUCIBLE 3, 2-oxoacid dehydrogenases acyltransferase family protein (.1.2) Lus10043117 [exp] 126 / 9e-31 AT4G26910 653 / 0.0 Dihydrolipoamide succinyltransferase (.1.2.3) Lus10032632 [exp] 119 / 2e-28 AT4G26910 560 / 0.0 Dihydrolipoamide succinyltransferase (.1.2.3) Lus10041467 [exp] 109 / 2e-25 AT3G25860 595 / 0.0 PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE, 2-oxoacid dehydrogenases acyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G027400 [exp] 865 / 0 AT3G52200 754 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Potri.003G043900 [exp] 325 / 1e-103 AT3G13930 771 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1) Potri.001G198000 [exp] 317 / 7e-101 AT3G13930 724 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1) Potri.013G114300 [exp] 167 / 3e-45 AT1G34430 549 / 0.0 embryo defective 3003, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Potri.008G119500 [exp] 155 / 7e-41 AT3G25860 464 / 5e-161 PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Potri.019G084900 [exp] 149 / 6e-39 AT1G34430 473 / 7e-165 embryo defective 3003, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Potri.010G126600 [exp] 142 / 3e-36 AT3G25860 470 / 2e-163 PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Potri.010G011300 [exp] 134 / 2e-33 AT3G06850 566 / 0.0 DARK INDUCIBLE 3, 2-oxoacid dehydrogenases acyltransferase family protein (.1.2) Potri.011G089200 [exp] 126 / 5e-31 AT5G55070 562 / 0.0 Dihydrolipoamide succinyltransferase (.1) Potri.014G154700 [exp] 125 / 1e-30 AT4G26910 520 / 0.0 Dihydrolipoamide succinyltransferase (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0105 [flax] [poplar] Hybrid PF00364 [flax] [poplar] Biotin_lipoyl Biotin-requiring enzyme CL0149 [flax] [poplar] CoA-acyltrans PF00198 [flax] [poplar] 2-oxoacid_dh 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CL0149 [flax] [poplar] PF02817 [flax] [poplar] E3_binding e3 binding domain
Representative CDS sequence Show only first row Show all	>Lus10008412 pacid=23163469 polypeptide=Lus10008412 locus=Lus10008412.g ID=Lus10008412.BGIv1.0 annot-version=v1.0 ATGACGCTTTCACGGCTCAGACATCCGGCGATCTCACGGGCCTCTTCTTTATTCAGAGCTCGGTTTATCTCCTACTGCGCTGACTCTTCCACTAGATCCC TTTCTCGGCCTTCTTCATTATTCAGCATCAAGGGCGCACATGATAGTCCCTTGAACATAACGTTGCACAGCAGTGTACGGCATTTCTCTTCGGAGGTTCC ACCACACACGGTTGTGGGGATGCCAGCTTTGTCCCCTACAATGACTCAAGGTAACATTGAAAAATGGAACAAGAAGGAAGGAGACAAGATAGAAGTTGGT GATGTACTTTGTGAAATAGAGACAGATAAGGCCACTCTTGAATTTGAATGCCTTGAAGAGGGATATTTGGCTAAGATATTGGCACCCGAAGGTTCAAAAG ATATACTTGTAGGACAGGCCATTGCTATAACTGTTGAGGATGCAGATGATATCGGTAAAGTCCCTGCGAGTGGCTCAGAGGTTAAAGAGGAAAAAATAAA AACCGGTGTAGATGTCAAACCTGAAGACAGTGTACATGAGAAGAGTTCTGTTCAGTTGAACACTTCAGAACTCCCACCCCATATTGTTCTTGGAATGCCA GCACTATCTCCCACAATGAATCAAGGCAACATTTTCAAGTGGAGGAAAAAGGAAGGTGATAAGATAGAAGTTGGTGACATAATATGTGAGATAGAGACAG ACAAAGCTACTCTTGAGTTTGAAAGTCTAGAAGAAGGGTATTTGGCTAAGATAGTGGCTCCAGACGGTTCGAAAGATGTTGCTGTTGGAGAACCTATTGC GATAACAGTCGAAGATCCAGACGATATTGAAATCATGAAGAATTCTGCTGCTATTGGGTCAGAAGTCAAAGACGAAAAACCTCTACCTGCAGCTACTAAA CAAGAAACGCAGGGAGCTCATGCTAGGGTTAGAAGGATTAGTCCGTCTGCTAAGATGCTAATTTCACAGCATGGATTGGATGTATCATCTTTGAACCCTT CGGGTTTCGATGGTACTCTACTTAAGACGGATGTTATGGAAGCTATAAAGTCAGGAAAGGGATCTAAAAGAAAACCAGAAACTAAAGAGAAAGTTGCTCC ATCACCTCAGAAAAGCCAGCAACCTTCTTCCGCAACCCCACCACTGGATTCAGATTCTTTTGAAGACATACCTAACTCTCAGATACGCAAGGTTATACCT AAGAGGCTGTTGGAATCAAAGCAGGGTACCCCACATTTATACCTGTCGACAGATGTCATTTTGGATCCGCTACTTGCTTTCAGAAAGGAGTTTAAAGAAA ATCATGATATTAAAGTTTCGGTCAATGACATTGTCATCAAAGCTGTTGCAGTTGCTCTAAAAAATGTACCAGAAGCCAATGCATATTGGAATGACGAGAA TGGTGAAATCATTCCCTGTGATTCTGTCGACATCTCGATTGCAGTTGCCACTGACAAGGGCTTGATGACACCTATAATTAAAAATGCTGATCAGAAATCT ATCTTAGCCATCTCTTTGGAGGTCAAACAACTCGCCGAAAAAGCCCGAACTGGGAAGCTTGCTCCACATGAGTTTCAAGGAGGGACGTTCAGCATTTCAA ACCTCGGTATGTATCCGGTCGATCAGTTCTCTGCAATAATCAACCCCCCACAGGCGGGCATACTAGCGATAGGCCGAGGAAACAAAGTAGTTGAGCCAGT GGTTGGAAGCGATGGAACTTTGGTTGCTGCGGTCGTGAACAAGATGATCTTGACTTTATCTGCCGATCATCGTGTTTTCGATGGCAAAGTTGGAGGTGCA TTCCTCTCGGCTCTGAGGTCAAACTTCAGTGACATCAGAAGACTACTACTCTAA
AA sequence Show only first row Show all	>Lus10008412 pacid=23163469 polypeptide=Lus10008412 locus=Lus10008412.g ID=Lus10008412.BGIv1.0 annot-version=v1.0 MTLSRLRHPAISRASSLFRARFISYCADSSTRSLSRPSSLFSIKGAHDSPLNITLHSSVRHFSSEVPPHTVVGMPALSPTMTQGNIEKWNKKEGDKIEVG DVLCEIETDKATLEFECLEEGYLAKILAPEGSKDILVGQAIAITVEDADDIGKVPASGSEVKEEKIKTGVDVKPEDSVHEKSSVQLNTSELPPHIVLGMP ALSPTMNQGNIFKWRKKEGDKIEVGDIICEIETDKATLEFESLEEGYLAKIVAPDGSKDVAVGEPIAITVEDPDDIEIMKNSAAIGSEVKDEKPLPAATK QETQGAHARVRRISPSAKMLISQHGLDVSSLNPSGFDGTLLKTDVMEAIKSGKGSKRKPETKEKVAPSPQKSQQPSSATPPLDSDSFEDIPNSQIRKVIP KRLLESKQGTPHLYLSTDVILDPLLAFRKEFKENHDIKVSVNDIVIKAVAVALKNVPEANAYWNDENGEIIPCDSVDISIAVATDKGLMTPIIKNADQKS ILAISLEVKQLAEKARTGKLAPHEFQGGTFSISNLGMYPVDQFSAIINPPQAGILAIGRGNKVVEPVVGSDGTLVAAVVNKMILTLSADHRVFDGKVGGA FLSALRSNFSDIRRLLL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52200		LTA3	Dihydrolipoamide acetyltransfe...		Lus10008412 [exp]	0	1
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10008139 [exp]	2.0	0.7815
AT3G52200		LTA3	Dihydrolipoamide acetyltransfe...		Lus10001967 [exp]	2.4	0.7871
AT3G54860		ATVPS33	VACUOLAR PROTEIN SORTING 33, S...		Lus10038698 [exp]	3.0	0.7834
AT1G48540			Outer arm dynein light chain 1...		Lus10017994 [exp]	4.8	0.8327
AT3G16857	GARP	ARR1	response regulator 1 (.1.2)		Lus10016846 [exp]	11.4	0.7311
AT2G19160			Core-2/I-branching beta-1,6-N-...		Lus10025464 [exp]	13.4	0.7241
AT2G19160			Core-2/I-branching beta-1,6-N-...		Lus10006952 [exp]	18.0	0.7295
					Lus10043467 [exp]	18.4	0.7650
AT2G37050			Leucine-rich repeat protein ki...		Lus10023166 [exp]	18.5	0.7786
AT5G40450			unknown protein		Lus10022266 [exp]	19.6	0.7714

Compare expression of checked genes

Lus10008412 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.