Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45740 471 / 8e-166 hydrolase family protein / HAD-superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001969 [exp] 436 / 1e-152 AT3G45740 298 / 9e-100 hydrolase family protein / HAD-superfamily protein (.1) Lus10023480 [exp] 402 / 3e-138 AT3G45740 448 / 2e-157 hydrolase family protein / HAD-superfamily protein (.1) Lus10040363 [exp] 132 / 6e-37 AT3G45740 129 / 6e-37 hydrolase family protein / HAD-superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G045700 [exp] 450 / 2e-156 AT3G45740 488 / 3e-172 hydrolase family protein / HAD-superfamily protein (.1) Potri.010G216000 [exp] 432 / 4e-150 AT3G45740 466 / 1e-164 hydrolase family protein / HAD-superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008416 pacid=23163500 polypeptide=Lus10008416 locus=Lus10008416.g ID=Lus10008416.BGIv1.0 annot-version=v1.0 ATGGGTTACCCGCCTAACCCACCGATCTACTATACCGCCAAGTTAGGGAAGAGACAGTCCTCCTTCTTCCCAAAATCTCCAATCCTTGTCTCCTTCCTAC GAGCTCAAGTTCAAATCGATTGGCGAAGAATAACCTTTGTGATAGGAAAGCCAGTAGCGCAGAAGAGATCGGAGTGGGGGGAAATGCGGTTTCAGTACCA AACCCTCGCTAATGCAATACGGAGGAGGAGCGGGAACTTGCCGCCGTCGCCGCCGCTTTTCCGTCCGCGGTCCTTCTCCTCTCCTTCCTTCCAAAATCCG CTTCCACGTTTCGGCATTGCGTTCGATATCGACGGCGTCCTTCTCCGCAGCGAAGTTCCAATCGGCGGCTCTCTCCAAGCTCTCAAACGCCTCTATAACT CATCCGGTCTCTTACGGATCCCTTACGTTTTCTTGACAAATGGTGGTGGTTTTCGAGAATCTATGAGAGCTTTGGAGTTGAGCAGACTCTTGGGTGTCAA CGTTTCTCCTTTGCAGGTTCTACAAAGTCATACTCCATTTAATAATCTGGTACAGAGGTTTAAGAGCGATCTTGTGGTTGCAGTTGGAAAAGGCGAGCCA GCTGCAGTGATGTCCGAATATGGATTTAAAAATGTCGTTTCTATAGATGAGTATTCAACCTATTTTCCTGGCATTGATCCACTTGCACCATACAAGAAGT GGGAAATCAAACAGCTTGCAAAAGGTAGTGACATTTCAGACGGCAGAACCTCAACCAACACTATCTGTTCACAGCCAGTACAGGCGGTGTTTGTACTCAG CGATCCTGTTGATTGGAGCAGAGACATTCAGGTTCTTTGTGACATCTTGAGAACTGGAGGTCTTCCTGGAAGAACGATTGGAGACCAGCCACAACTGTAT TTTGCCCATGATGACCTTGTATACCAGGCTGCTTTTCCTTCAGAACGTTTCGGTCTAGGAGCTTTCAGAATTGTGTTAGAATCCATCTTCAACAGGATTC ACCATCACCCTCTTAGCTACACGTGTTACGGGAAGCCAAAGCCATTTGTATTCAAGAACGCTGAAAATGTGCTAAAGCAATTAGCATCATCAAGCCTTCA CAGTGGGCTAGCCCCAGAGAATGCAAGTGATGGAACACATCATTTCGAAAGACTGTATATGATAGGAGATAACCCAGCAGTTGACATCAAAGGCGCACAA CAGGCCGGACATCCTTGGTTCTCAATCTTGACAAGAACTGGGGTCTTCAAAGGAACTGGAAACCATGACAAGTTTGCAGCAGACCTGGTTGTTGACACAG TGGAAGAGGCAGTGGACTACATTATAAGAAAGGAATGCAGCTGA
AA sequence Show only first row Show all	>Lus10008416 pacid=23163500 polypeptide=Lus10008416 locus=Lus10008416.g ID=Lus10008416.BGIv1.0 annot-version=v1.0 MGYPPNPPIYYTAKLGKRQSSFFPKSPILVSFLRAQVQIDWRRITFVIGKPVAQKRSEWGEMRFQYQTLANAIRRRSGNLPPSPPLFRPRSFSSPSFQNP LPRFGIAFDIDGVLLRSEVPIGGSLQALKRLYNSSGLLRIPYVFLTNGGGFRESMRALELSRLLGVNVSPLQVLQSHTPFNNLVQRFKSDLVVAVGKGEP AAVMSEYGFKNVVSIDEYSTYFPGIDPLAPYKKWEIKQLAKGSDISDGRTSTNTICSQPVQAVFVLSDPVDWSRDIQVLCDILRTGGLPGRTIGDQPQLY FAHDDLVYQAAFPSERFGLGAFRIVLESIFNRIHHHPLSYTCYGKPKPFVFKNAENVLKQLASSSLHSGLAPENASDGTHHFERLYMIGDNPAVDIKGAQ QAGHPWFSILTRTGVFKGTGNHDKFAADLVVDTVEEAVDYIIRKECS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45740			hydrolase family protein / HAD...		Lus10008416 [exp]	0	1
AT1G80420		ATXRCC1	BRCT domain-containing DNA rep...		Lus10035899 [exp]	14.9	0.7450
AT2G02130		PDF2.3, LCR68	low-molecular-weight cysteine-...		Lus10029544 [exp]	19.2	0.7620
AT5G26650	MADS	AGL36	AGAMOUS-like 36 (.1)		Lus10007592 [exp]	22.2	0.7410
AT4G15620			Uncharacterised protein family...		Lus10012562 [exp]	37.4	0.7570
AT3G61610			Galactose mutarotase-like supe...		Lus10010131 [exp]	39.5	0.7246
AT1G20580			Small nuclear ribonucleoprotei...		Lus10012263 [exp]	48.1	0.7445
AT3G58100		PDCB5	plasmodesmata callose-binding ...		Lus10002193 [exp]	49.6	0.7329
AT1G17140		RIP1, ICR1	ROP INTERACTIVE PARTNER 1, int...		Lus10005576 [exp]	67.0	0.7321
AT2G20980		MCM10	minichromosome maintenance 10 ...		Lus10014124 [exp]	71.2	0.7164
AT3G04550			unknown protein		Lus10012941 [exp]	74.2	0.7092

Compare expression of checked genes

Lus10008416 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.