Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G05830 538 / 0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3.4) AT3G07300 71 / 2e-13 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3) AT2G44070 64 / 3e-11 NagB/RpiA/CoA transferase-like superfamily protein (.1) AT1G53900 65 / 4e-11 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) AT1G53880 65 / 4e-11 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) AT1G72340 61 / 4e-10 NagB/RpiA/CoA transferase-like superfamily protein (.1) AT5G38640 57 / 9e-09 NagB/RpiA/CoA transferase-like superfamily protein (.1) AT1G48970 42 / 0.0005 NagB/RpiA/CoA transferase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001970 [exp] 692 / 0 AT2G05830 538 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3.4) Lus10002762 [exp] 76 / 7e-15 AT3G07300 624 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3) Lus10016349 [exp] 74 / 3e-14 AT3G07300 624 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3) Lus10037451 [exp] 67 / 2e-12 AT1G53900 479 / 6e-172 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) Lus10003938 [exp] 66 / 1e-11 AT1G53900 597 / 0.0 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) Lus10027234 [exp] 52 / 7e-07 AT5G38640 704 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1) Lus10038944 [exp] 51 / 9e-07 AT5G38640 694 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G219900 [exp] 584 / 0 AT2G05830 526 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3.4) Potri.001G026100 [exp] 72 / 1e-13 AT3G07300 632 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3) Potri.T126106 [exp] 72 / 1e-13 AT3G07300 595 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3) Potri.003G199301 [exp] 72 / 1e-13 AT3G07300 595 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3) Potri.001G163300 [exp] 70 / 5e-13 AT1G53900 589 / 0.0 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) Potri.003G072100 [exp] 66 / 9e-12 AT1G53900 587 / 0.0 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) Potri.010G068600 [exp] 64 / 5e-11 AT3G07300 482 / 3e-170 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3) Potri.017G111800 [exp] 58 / 5e-09 AT5G38640 775 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1) Potri.004G103700 [exp] 52 / 3e-07 AT5G38640 792 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0246 [flax] [poplar] ISOCOT_Fold PF01008 [flax] [poplar] IF-2B Initiation factor 2 subunit family
Representative CDS sequence Show only first row Show all	>Lus10008417 pacid=23163476 polypeptide=Lus10008417 locus=Lus10008417.g ID=Lus10008417.BGIv1.0 annot-version=v1.0 ATGCCTCCGAATTCATCAGCCGCCGCCTCCGCCGCCGCCGATGACAGCACTCTTCAGTCCATTTGCTACACCCGCGGCTCTCTTCAGCTCCTTGACCAGA GGAAGCTCCCCCTAGAGACCATTTACTTGGAGATCAAAGATTCTTCTGATGGATGGTTGGCGATACAAGATATGGTGGTCCGTGGGGCACCTGCTATCGC CATTGCAGCTGCTCTCTCCCTTGCGGTTGAAGTGTCTAACCTAGGGATTTTCACTGGTACACCTGTGGAAGCTGCATCGTTCCTTTCTGCTAAATTGGAA TATCTCGTTTCAAGCCGTCCAACTGCAGTGAATCTGTCTGATGCTGCAACGAAGCTGAAAGATGTCATAGGGAAGGCTACTGCTGGAGCATCTGAAGCTA GCAATGTTTTTCAGGCTTATGTCGAAGCGGCTGAAGTCATGCTTGAAGAAGATGTTGCTTCAAACAAAGCAATCGGGTCATATGGAGCACAATTCATTCA GAACCGCTTGAATGGCCGTACGAGCTTTTCTGTTCTGACTCACTGCAATACTGGCAGTCTTGCAACAGCTGGATATGGGACTGCTCTGGGTGTCATCCGT GCACTTCATTCAGGAGGAGTGTTGGAAAGAGCTTATTGTACTGAAACTCGTCCATTTAATCAAGGATCTAGGCTCACAGCTTTTGAGTTGGTGCATGAGA AAATACCTTCTACTCTAGTAGCAGACTCTGCTGCTGCAGCATTGATGAAAGAAGGTCGAGTGAGCGCCGTTATTGTTGGAGCAGATCGAGTTGCTTCCAA TGGTGACACTGCAAACAAGATCGGGACCTACAGCCTAGCACTCTGTGCTATGCATCACAAAATCCCATTTTACGTTGCTGCACCCATTACATCAGTCGAT CTGTCCCTTAGTTCCGGGAAGCAAATAGTTATAGAGGAAAGATCTCCAAAGGAGCTGCTGAACTCTCGCGGAGGACTTGGCGAACAGGTTGCTGCATCTG GGATTTCGGTTTGGAACCCTGCTTTCGATGTCACCCCTGCAGACTTGATAACCGGCATCATAACTGAGAAGGGTGTCATCACGAAGGTAGATGGTGACGA GTTCGACATAAAAGCTTTCGTGGCAAGCAACGCATCCTAG
AA sequence Show only first row Show all	>Lus10008417 pacid=23163476 polypeptide=Lus10008417 locus=Lus10008417.g ID=Lus10008417.BGIv1.0 annot-version=v1.0 MPPNSSAAASAAADDSTLQSICYTRGSLQLLDQRKLPLETIYLEIKDSSDGWLAIQDMVVRGAPAIAIAAALSLAVEVSNLGIFTGTPVEAASFLSAKLE YLVSSRPTAVNLSDAATKLKDVIGKATAGASEASNVFQAYVEAAEVMLEEDVASNKAIGSYGAQFIQNRLNGRTSFSVLTHCNTGSLATAGYGTALGVIR ALHSGGVLERAYCTETRPFNQGSRLTAFELVHEKIPSTLVADSAAAALMKEGRVSAVIVGADRVASNGDTANKIGTYSLALCAMHHKIPFYVAAPITSVD LSLSSGKQIVIEERSPKELLNSRGGLGEQVAASGISVWNPAFDVTPADLITGIITEKGVITKVDGDEFDIKAFVASNAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G05830			NagB/RpiA/CoA transferase-like...		Lus10008417 [exp]	0	1
AT5G46250			RNA-binding protein (.1.2.3)		Lus10038494 [exp]	2.4	0.9219
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10003557 [exp]	2.4	0.9328
AT1G23820		SPDS1	spermidine synthase 1 (.1.2)		Lus10030861 [exp]	4.5	0.9044
AT1G73730	EIL	AtEIL3, ATSLIM,...	ARABIDOPSIS THALIANA SULFUR LI...		Lus10031245 [exp]	5.2	0.8487
AT1G80600		WIN1	HOPW1-1-interacting 1 (.1)		Lus10031196 [exp]	5.5	0.9039
AT3G48180			unknown protein		Lus10027187 [exp]	7.1	0.8750
AT2G05830			NagB/RpiA/CoA transferase-like...		Lus10001970 [exp]	7.9	0.8525
AT2G38640			Protein of unknown function (D...		Lus10007423 [exp]	9.9	0.9056
AT3G48980			Arabidopsis thaliana protein o...		Lus10039227 [exp]	10.7	0.8578
AT5G58730			pfkB-like carbohydrate kinase ...		Lus10018235 [exp]	15.0	0.8842

Compare expression of checked genes

Lus10008417 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.