Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003370 [exp] 62 / 4e-13 ND 37 / 0.002
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008418 pacid=23163497 polypeptide=Lus10008418 locus=Lus10008418.g ID=Lus10008418.BGIv1.0 annot-version=v1.0 ATGGCAACGGTTATAATCAATGACGCGTTGTTAACATTATCACTGGTTCTAGCAATCATCACCACCACCACTACTACCGTCGTGGTCAGCGCCGACGACG CCGAGGACATCCCCAACCACAAATGCGACACCGGAACGTGCAACGACGTCCCGACCGCGGTGGCGCTTAAAAAATCACTGATCAACGATCTGAATGATAA AGTGCCAAAGGAGGTGGCGAACCTATCTTACTGCAACACGTTGGCGTGGAAAGGGGTGACGATGTGGGGTTACGGCCAGTGCACACGCCAGATCGACAAC GACACGTCGTACTGCAGAATCTGTCTGTCCCTCGTCGGCAATGACCTCATCGCAAGCTGCAACGACGAAGCCGCTTCTGGTTATGCTTGGGATAAACTTG GCGCCTGCTACCTCAAGGTTGGCTTCACCAGTGATGCATGCCTCTGA
AA sequence Show only first row Show all	>Lus10008418 pacid=23163497 polypeptide=Lus10008418 locus=Lus10008418.g ID=Lus10008418.BGIv1.0 annot-version=v1.0 MATVIINDALLTLSLVLAIITTTTTTVVVSADDAEDIPNHKCDTGTCNDVPTAVALKKSLINDLNDKVPKEVANLSYCNTLAWKGVTMWGYGQCTRQIDN DTSYCRICLSLVGNDLIASCNDEAASGYAWDKLGACYLKVGFTSDACL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10008418 [exp]	0	1
					Lus10034849 [exp]	5.0	0.8446
ATCG00900		ATCG00900.1, RP...	CHLOROPLAST RIBOSOMAL PROTEIN ...		Lus10000168 [exp]	7.1	0.7931
AT4G12490			Bifunctional inhibitor/lipid-t...		Lus10012763 [exp]	7.1	0.7124
ATCG00900		ATCG00900.1, RP...	CHLOROPLAST RIBOSOMAL PROTEIN ...		Lus10002395 [exp]	8.7	0.7931
					Lus10010418 [exp]	9.8	0.7445
					Lus10025316 [exp]	13.2	0.7368
AT2G40780			Nucleic acid-binding, OB-fold-...		Lus10030510 [exp]	14.5	0.7368
AT5G39200			unknown protein		Lus10030710 [exp]	15.7	0.7368
AT1G64660		ATMGL	methionine gamma-lyase (.1)		Lus10033233 [exp]	16.7	0.7368
AT1G17930			Aminotransferase-like, plant m...		Lus10021566 [exp]	17.7	0.7368

Compare expression of checked genes

Lus10008418 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.