Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02450 323 / 1e-107 NAC LOV1, ANAC034, ANAC035 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) AT2G17040 191 / 1e-57 NAC ANAC036 NAC domain containing protein 36 (.1) AT5G39820 189 / 3e-56 NAC ANAC094 NAC domain containing protein 94 (.1) AT4G27410 188 / 4e-56 NAC RD26, ANAC072 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) AT1G26870 189 / 4e-55 NAC FEZ, ANAC009 FEZ, Arabidopsis NAC domain containing protein 9, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT3G15500 186 / 5e-55 NAC ATNAC3, ANAC055 NAC domain containing protein 55, NAC domain containing protein 3 (.1) AT5G08790 184 / 1e-54 NAC ATAF2, ANAC081 Arabidopsis NAC domain containing protein 81, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT1G52890 184 / 2e-54 NAC ANAC019 NAC domain containing protein 19 (.1) AT1G61110 183 / 4e-54 NAC ANAC025 NAC domain containing protein 25 (.1) AT1G01720 182 / 4e-54 NAC ATAF1, ANAC002 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003367 [exp] 525 / 0 AT2G02450 333 / 3e-110 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) Lus10023208 [exp] 340 / 2e-114 AT2G02450 321 / 3e-108 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) Lus10008897 [exp] 330 / 1e-110 AT2G02450 315 / 5e-106 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) Lus10008420 [exp] 328 / 3e-109 AT2G02450 320 / 2e-106 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) Lus10015367 [exp] 190 / 2e-56 AT1G26870 298 / 8e-99 FEZ, Arabidopsis NAC domain containing protein 9, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10022636 [exp] 189 / 2e-56 AT2G17040 287 / 6e-97 NAC domain containing protein 36 (.1) Lus10007263 [exp] 188 / 2e-55 AT5G39820 300 / 3e-100 NAC domain containing protein 94 (.1) Lus10037178 [exp] 191 / 3e-55 AT5G39820 306 / 3e-101 NAC domain containing protein 94 (.1) Lus10036749 [exp] 190 / 3e-55 AT1G26870 306 / 4e-100 FEZ, Arabidopsis NAC domain containing protein 9, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G046700 [exp] 340 / 8e-114 AT2G02450 318 / 2e-106 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) Potri.004G230800 [exp] 325 / 6e-108 AT2G02450 311 / 2e-103 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) Potri.001G404100 [exp] 190 / 2e-56 AT4G27410 370 / 8e-129 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Potri.011G123300 [exp] 189 / 3e-56 AT4G27410 354 / 2e-122 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Potri.009G141600 [exp] 187 / 4e-56 AT2G17040 314 / 6e-108 NAC domain containing protein 36 (.1) Potri.019G031400 [exp] 187 / 4e-55 AT3G04070 332 / 1e-112 NAC domain containing protein 47 (.1.2) Potri.011G046700 [exp] 184 / 5e-54 AT1G61110 331 / 8e-113 NAC domain containing protein 25 (.1) Potri.002G081000 [exp] 182 / 7e-54 AT1G01720 416 / 5e-148 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.005G069500 [exp] 182 / 9e-54 AT1G01720 357 / 3e-124 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.004G038000 [exp] 183 / 1e-53 AT1G61110 332 / 3e-113 NAC domain containing protein 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10008419 pacid=23163516 polypeptide=Lus10008419 locus=Lus10008419.g ID=Lus10008419.BGIv1.0 annot-version=v1.0 ATGGTGATGCCGGGGTTTAGGTTTCATCCCACGGAGGAAGAGCTTGTCGAGTTCTACCTTCGCCGTAAGGTTGAGGGCAAGCGCTTCAACGTTGAGCTCA TTACTTTTCTAGACCTTTATCGCTTTGATCCCTGGGAACTCCCTGCGATGGCGGCGATTGGGGAGAAGGAGTGGTTCTTCTACGTGCCGAGGGATAGGAA GTACCGGAACGGTGATCGGCCGAACCGAGTGACGACTTCGGGTTACTGGAAGGCGACTGGGGCCGACCGGATGATTCGAACCGAGAATTCGAGGTCGATT GGGTTGAAGAAAACCCTAGTTTTTTACTCCGGGAAGGCTCCCAAGGGGATACGGACTAGTTGGATTATGAACGAGTATCGTCTTCCTCATCATGATACCC AGCGCTATCAAAAGACGGAGATATCACTATGCCGGGTATACAAGCGAGCCGGAGTTGAAGATCACCATGGCGGACCTTCGTCTCTTCCACGTACACTTCC TTCCTCAATCAACAGGCCACACCACTACCAGCATCAAAATCACATGGGCGCATCTTCCTCTTCTTCAAAGAAACACCAACGCATCCACCAAGAACAAGAA CAGCAACATCAACACCTTCTACAGCCGTCAGAGCAACAGCAGCATCATCATCAGCTTCTGCAGCTTCAGCCTTTCAGCACCCAAGTTATGATGTTGATGG ACGTTGACAAGTTGACCAACGCCTCCACTAGTACTAGTACTACTTGCACTGCTACCGCCATTGGTACTAGTACCGACTCTAATCTCGCGGCCGCTGGACT AATCTCCAACACTACCTCACTCGGACTCCTCCCGCCCACACTGGGTCCTGATCATCATTCACGACTACTTCCTATACATCATCATCATCGTCAAGAAGAT GAAGAGCAGTTAATGCTGCTCCTAAACCGTGGAGGAGGACCCTCTGACCAGCCTAGCAGTAGTAGTAACATGAATAACAGCAACACTACACTTCCAGCAG GTTTGGATGATTTGCAACGGCTAGTTAACTACCAACAGCATCAGCAGCAATACTACACTAGACTCCTTCAGCATCATCAGCAGCAGAATGATGATCCTCA ACCTCATCAAGTACTTCAGCAGATGATGATTTTCCCTCCAACTACTCCAAGTCCACAGCAAATTGTGCTCCCAACTACAAGCCTTCCCACCATTAATAAC AGATCATCATCGTCGTCGCTGAACATTTGGGACTGGAACCTGCTCCCACCTCCGCCGCCTCAGCATCAGCATCATCAGTCAGACGATCAGAATCATCATC CTCCTCCTCCTCATTACGACACCAATAATGACGACATTAATCCTTTCAAGTAA
AA sequence Show only first row Show all	>Lus10008419 pacid=23163516 polypeptide=Lus10008419 locus=Lus10008419.g ID=Lus10008419.BGIv1.0 annot-version=v1.0 MVMPGFRFHPTEEELVEFYLRRKVEGKRFNVELITFLDLYRFDPWELPAMAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTENSRSI GLKKTLVFYSGKAPKGIRTSWIMNEYRLPHHDTQRYQKTEISLCRVYKRAGVEDHHGGPSSLPRTLPSSINRPHHYQHQNHMGASSSSSKKHQRIHQEQE QQHQHLLQPSEQQQHHHQLLQLQPFSTQVMMLMDVDKLTNASTSTSTTCTATAIGTSTDSNLAAAGLISNTTSLGLLPPTLGPDHHSRLLPIHHHHRQED EEQLMLLLNRGGGPSDQPSSSSNMNNSNTTLPAGLDDLQRLVNYQQHQQQYYTRLLQHHQQQNDDPQPHQVLQQMMIFPPTTPSPQQIVLPTTSLPTINN RSSSSSLNIWDWNLLPPPPPQHQHHQSDDQNHHPPPPHYDTNNDDINPFK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02450	NAC	LOV1, ANAC034, ...	LONG VEGETATIVE PHASE 1, Arabi...		Lus10008419 [exp]	0	1
AT2G02450	NAC	LOV1, ANAC034, ...	LONG VEGETATIVE PHASE 1, Arabi...		Lus10023208 [exp]	1.7	0.8786
AT1G32200		ACT1, ATS1	ACYLTRANSFERASE 1, phospholipi...		Lus10000675 [exp]	2.2	0.8336
AT1G07180		NDA1, ATNDI1	ARABIDOPSIS THALIANA INTERNAL ...		Lus10040657 [exp]	2.8	0.8572
					Lus10001828 [exp]	3.5	0.8496
AT2G02450	NAC	LOV1, ANAC034, ...	LONG VEGETATIVE PHASE 1, Arabi...		Lus10003367 [exp]	4.9	0.8358
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Lus10012510 [exp]	5.7	0.7776
AT4G00730	HD	AHDP, ANL2	ANTHOCYANINLESS 2, ARABIDOPSIS...		Lus10003299 [exp]	6.3	0.8276
AT5G47860			Protein of unknown function (D...		Lus10009920 [exp]	6.3	0.7539
AT1G68050		ADO3, FKF1	"flavin-binding, kelch repeat,...		Lus10019169 [exp]	6.5	0.7711
AT1G25440	CO	COL16	B-box type zinc finger protein...		Lus10034322 [exp]	10.2	0.8289

Compare expression of checked genes

Lus10008419 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.