Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03740 573 / 0 ATBPM4 BTB-POZ and MATH domain 4 (.1) AT3G43700 525 / 0 ATBPM6 BTB-POZ and MATH domain 6 (.1) AT5G21010 524 / 0 ATBPM5 BTB-POZ and MATH domain 5 (.1) AT3G06190 434 / 9e-150 ATBPM2 BTB-POZ and MATH domain 2 (.1.2) AT5G19000 419 / 4e-144 ATBPM1 BTB-POZ and MATH domain 1 (.1.2) AT2G39760 419 / 9e-144 ATBPM3 BTB/POZ/MATH-domains containing protein (.1.2) AT5G19330 76 / 2e-14 ARIA ARM repeat protein interacting with ABF2 (.1.2) AT5G13060 73 / 2e-13 ABAP1 ARMADILLO BTB protein 1 (.1) AT1G55760 67 / 7e-12 BTB/POZ domain-containing protein (.1) AT3G56230 58 / 4e-09 BTB/POZ domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003365 [exp] 870 / 0 AT3G03740 601 / 0.0 BTB-POZ and MATH domain 4 (.1) Lus10021946 [exp] 434 / 6e-150 AT3G06190 620 / 0.0 BTB-POZ and MATH domain 2 (.1.2) Lus10004701 [exp] 434 / 2e-149 AT2G39760 598 / 0.0 BTB/POZ/MATH-domains containing protein (.1.2) Lus10040267 [exp] 433 / 3e-149 AT2G39760 597 / 0.0 BTB/POZ/MATH-domains containing protein (.1.2) Lus10041235 [exp] 200 / 8e-61 AT3G06190 339 / 8e-117 BTB-POZ and MATH domain 2 (.1.2) Lus10034070 [exp] 82 / 3e-16 AT5G19330 1092 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Lus10010527 [exp] 81 / 6e-16 AT5G19330 1103 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Lus10022039 [exp] 80 / 2e-15 AT5G13060 821 / 0.0 ARMADILLO BTB protein 1 (.1) Lus10042583 [exp] 79 / 2e-15 AT5G19330 822 / 0.0 ARM repeat protein interacting with ABF2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G156500 [exp] 637 / 0 AT3G03740 580 / 0.0 BTB-POZ and MATH domain 4 (.1) Potri.004G194200 [exp] 632 / 0 AT3G03740 573 / 0.0 BTB-POZ and MATH domain 4 (.1) Potri.019G039500 [exp] 580 / 0 AT3G03740 618 / 0.0 BTB-POZ and MATH domain 4 (.1) Potri.008G059600 [exp] 439 / 1e-151 AT2G39760 549 / 0.0 BTB/POZ/MATH-domains containing protein (.1.2) Potri.010G199200 [exp] 432 / 3e-149 AT2G39760 528 / 0.0 BTB/POZ/MATH-domains containing protein (.1.2) Potri.010G029500 [exp] 430 / 3e-148 AT3G06190 580 / 0.0 BTB-POZ and MATH domain 2 (.1.2) Potri.008G200700 [exp] 420 / 3e-144 AT3G06190 582 / 0.0 BTB-POZ and MATH domain 2 (.1.2) Potri.001G184200 [exp] 403 / 6e-140 AT3G03740 342 / 1e-116 BTB-POZ and MATH domain 4 (.1) Potri.005G210000 [exp] 73 / 2e-13 AT5G19330 977 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Potri.002G052700 [exp] 73 / 2e-13 AT5G19330 994 / 0.0 ARM repeat protein interacting with ABF2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0389 [flax] [poplar] TRAF PF00917 [flax] [poplar] MATH MATH domain CL0033 [flax] [poplar] POZ PF00651 [flax] [poplar] BTB BTB/POZ domain
Representative CDS sequence Show only first row Show all	>Lus10008421 pacid=23163467 polypeptide=Lus10008421 locus=Lus10008421.g ID=Lus10008421.BGIv1.0 annot-version=v1.0 ATGGCGATCATCGACACTACTCCAGTGCTTTCTCCGACGTCGTCTCAATCGGTAACGCAGACAGTGAACGGATCCCACCGGTTCGTGATCCAGGGTTATT CGCTGGCGAAAGGAATGGGCGTGGGAAAGCACATTGCCAGCAACAATTTTACTGTCGGAGGGTATCAGTGGGCCATCTATTTCTATCCCGACGGGAAGAA TCCCGAGGACAATTCCGCTTACGTATCGGTGTTCATCGCCTTAGCAAGTGAGGGGACGGACGTAAGGGCTCTGTTCGAGTTGACGCTGGTTGACCAGAGC GGTAAAGAGAAGCATAAGGTTCACAGCCATTTCGATCGTTCGCTTGAGAGCGGGCCATACACTCTCAAGTATCGCGGCAGTATGTGGGGATACAAAAGAT TTTTCAGACGTACGATGCTTGAGACATCAGATTACCTAAAGAATGATTGCTTAAAAATCAACTGTACTGTTGGAGTTGTGGTGTCTGCTATAGATTGTTC CCGGTTGCACTCAATCCAGGTCCCTGAGTCTGATATAGGAGCAAATTTTGGCAAGCTTCTTGAGACTATGGAAGGTTCAGATGTTACTTTTAATGTGGCA GGGGAAAAGTTTGAAGCTCACAAGTTAGTATTGGCTGCTAGATCTCCTCTTTTCCGATCAAAATTCTTTGATAATGGGGAAGATAAAGAAGAGATAGTCA TTACTGATCTAGAGCCCAATGTTTTCAAGGCCTTACTCCATTTTATTTACCACGATACACTTACTGAAGATGTGGATGATTCTGCATCGAGCTCAGCTGT TGTCTCCACAGTATCTGATTCTTTGACAGGAAAGTTGTTAGCAGCAGCAGATACGTATGGTCTAAATCGACTTAGGTTGATGTGTGAGTCTCATCTATGT AAGGATATATCAGTGGACTCAGTCGCAAGAGTATTAGCATTGGCAGACAGCTATCACGCTACAGAGTTAAAGGCTGTCTGCTTAAAATTTACCGCAGAAA ACCTTGCAGCTGTGATGAGGTCTGATGGATTTGAATACCTAAAGGAGAATTGCCCGACTCTGCAGTCGGAGCTGCTGAAGACGGTGGCTGGGTGCGAGGA GGATTGTAGCAGCGGAGGTGGGAAGTCGCGGAGCGTATGGGCTCAACTCTCGGATGGCGGTGATACCAACGAAAGGAGGCCACAAAACATCCCCATCGCA CACCCGACTGAGAGAACAAGCCCTAATACGCGGCGACAAATCCACTGTACTTCCGACGAGATGCGTTGGTACTGCAGCCACTGTCTCCGATCCTGCCCGA CAATGCGCCAAGGCGATTTCATATCTTGCTCCGAATGCGGGAAGGTGCTGGGTGATCGGACCTCTGCCGCCGATATGAAGAAGGCTGTGAAGAAGTCTGG CGTGGCAGGATCGAAGAGAGTTCAAATCAGTAGAAGAATTGGCGACGGAATTGATACTGACGACTCCAATGCTGAGACTGAGAGCGAGGAATCGTCCTCC TGA
AA sequence Show only first row Show all	>Lus10008421 pacid=23163467 polypeptide=Lus10008421 locus=Lus10008421.g ID=Lus10008421.BGIv1.0 annot-version=v1.0 MAIIDTTPVLSPTSSQSVTQTVNGSHRFVIQGYSLAKGMGVGKHIASNNFTVGGYQWAIYFYPDGKNPEDNSAYVSVFIALASEGTDVRALFELTLVDQS GKEKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFRRTMLETSDYLKNDCLKINCTVGVVVSAIDCSRLHSIQVPESDIGANFGKLLETMEGSDVTFNVA GEKFEAHKLVLAARSPLFRSKFFDNGEDKEEIVITDLEPNVFKALLHFIYHDTLTEDVDDSASSSAVVSTVSDSLTGKLLAAADTYGLNRLRLMCESHLC KDISVDSVARVLALADSYHATELKAVCLKFTAENLAAVMRSDGFEYLKENCPTLQSELLKTVAGCEEDCSSGGGKSRSVWAQLSDGGDTNERRPQNIPIA HPTERTSPNTRRQIHCTSDEMRWYCSHCLRSCPTMRQGDFISCSECGKVLGDRTSAADMKKAVKKSGVAGSKRVQISRRIGDGIDTDDSNAETESEESSS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03740		ATBPM4	BTB-POZ and MATH domain 4 (.1)		Lus10008421 [exp]	0	1
AT1G60170		EMB1220	embryo defective 1220, pre-mRN...		Lus10029168 [exp]	1.7	0.9168
AT1G22800			S-adenosyl-L-methionine-depend...		Lus10018987 [exp]	5.3	0.9076
AT1G68310		AE7	AS1/2 ENHANCER7, Protein of un...		Lus10035403 [exp]	6.0	0.8934
AT1G76900	TUB	AtTLP1	tubby like protein 1 (.1.2)		Lus10018884 [exp]	6.7	0.9027
AT1G49180			protein kinase family protein ...		Lus10033518 [exp]	8.2	0.8981
AT4G02485			2-oxoglutarate (2OG) and Fe(II...		Lus10015618 [exp]	11.4	0.8725
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10009217 [exp]	14.3	0.8936
AT3G21865		PEX22	peroxin 22 (.1)		Lus10039690 [exp]	15.7	0.8907
AT5G51170			unknown protein		Lus10035151 [exp]	16.4	0.8582
AT5G55000		FIP2	potassium channel tetramerisat...		Lus10002622 [exp]	16.8	0.8185

Compare expression of checked genes

Lus10008421 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.