Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17920 1372 / 0 ATCIMS, ATMETS, ATMS1 methionine synthesis 1, COBALAMIN-INDEPENDENT METHIONINE SYNTHASE, Cobalamin-independent synthase family protein (.1.2) AT3G03780 1360 / 0 ATMS2 methionine synthase 2 (.1.2.3) AT5G20980 1301 / 0 ATMS3 methionine synthase 3 (.1.2) AT5G41070 118 / 4e-28 DRB5 dsRNA-binding protein 5 (.1) AT3G26932 115 / 1e-27 DRB3 dsRNA-binding protein 3 (.1.2) AT2G28380 114 / 1e-26 DRB2 dsRNA-binding protein 2 (.1) AT3G62800 100 / 8e-23 DRB4 double-stranded-RNA-binding protein 4 (.1.2.3) AT1G09700 65 / 2e-10 DRB1, HYL1 HYPONASTIC LEAVES 1, DSRNA-BINDING PROTEIN 1, dsRNA-binding domain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003363 [exp] 1550 / 0 AT5G17920 1384 / 0.0 methionine synthesis 1, COBALAMIN-INDEPENDENT METHIONINE SYNTHASE, Cobalamin-independent synthase family protein (.1.2) Lus10002620 [exp] 1360 / 0 AT5G17920 1430 / 0.0 methionine synthesis 1, COBALAMIN-INDEPENDENT METHIONINE SYNTHASE, Cobalamin-independent synthase family protein (.1.2) Lus10020273 [exp] 1360 / 0 AT5G17920 1434 / 0.0 methionine synthesis 1, COBALAMIN-INDEPENDENT METHIONINE SYNTHASE, Cobalamin-independent synthase family protein (.1.2) Lus10003362 [exp] 362 / 1e-118 AT2G28380 116 / 1e-30 dsRNA-binding protein 2 (.1) Lus10035176 [exp] 115 / 4e-27 AT5G41070 321 / 4e-107 dsRNA-binding protein 5 (.1) Lus10032007 [exp] 114 / 8e-27 AT5G41070 320 / 8e-107 dsRNA-binding protein 5 (.1) Lus10000721 [exp] 110 / 4e-25 AT2G28380 442 / 3e-153 dsRNA-binding protein 2 (.1) Lus10021471 [exp] 103 / 5e-23 AT2G28380 435 / 2e-150 dsRNA-binding protein 2 (.1) Lus10002619 [exp] 89 / 5e-18 AT3G62800 162 / 6e-46 double-stranded-RNA-binding protein 4 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G190900 [exp] 1409 / 0 AT5G17920 1401 / 0.0 methionine synthesis 1, COBALAMIN-INDEPENDENT METHIONINE SYNTHASE, Cobalamin-independent synthase family protein (.1.2) Potri.009G152800 [exp] 1390 / 0 AT5G17920 1394 / 0.0 methionine synthesis 1, COBALAMIN-INDEPENDENT METHIONINE SYNTHASE, Cobalamin-independent synthase family protein (.1.2) Potri.019G038268 [exp] 1387 / 0 AT5G17920 1454 / 0.0 methionine synthesis 1, COBALAMIN-INDEPENDENT METHIONINE SYNTHASE, Cobalamin-independent synthase family protein (.1.2) Potri.013G061800 [exp] 1384 / 0 AT5G17920 1440 / 0.0 methionine synthesis 1, COBALAMIN-INDEPENDENT METHIONINE SYNTHASE, Cobalamin-independent synthase family protein (.1.2) Potri.017G063700 [exp] 121 / 9e-29 AT5G41070 322 / 2e-106 dsRNA-binding protein 5 (.1) Potri.001G325300 [exp] 119 / 7e-28 AT3G26932 313 / 2e-103 dsRNA-binding protein 3 (.1.2) Potri.013G032400 [exp] 115 / 2e-26 AT5G41070 266 / 9e-84 dsRNA-binding protein 5 (.1) Potri.005G045700 [exp] 110 / 8e-25 AT3G26932 258 / 6e-81 dsRNA-binding protein 3 (.1.2) Potri.009G152900 [exp] 100 / 6e-22 AT3G26932 118 / 4e-29 dsRNA-binding protein 3 (.1.2) Potri.013G061500 [exp] 100 / 1e-21 AT3G62800 162 / 3e-45 double-stranded-RNA-binding protein 4 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0160 [flax] [poplar] Methionine_synt PF01717 [flax] [poplar] Meth_synt_2 Cobalamin-independent synthase, Catalytic domain CL0196 [flax] [poplar] DSRM PF00035 [flax] [poplar] dsrm Double-stranded RNA binding motif CL0160 [flax] [poplar] Methionine_synt PF08267 [flax] [poplar] Meth_synt_1 Cobalamin-independent synthase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10008422 pacid=23163474 polypeptide=Lus10008422 locus=Lus10008422.g ID=Lus10008422.BGIv1.0 annot-version=v1.0 ATGGCGTCTCACATTGTCGGTTATCCTCGCATGGGGCCCAAGAGAGAGCTCAAGTTTGCTTTAGAATCTTTCTGGGAGGGCAAGAGCACTGCTGAAGACT TGCAGAAGGTTGCAAAAGATCTCAGGTCATCCATCTGGAAGCAGATGTCCGATGCTGGGATCAAGTATATTCCCAGCAATACTTTTTCATACTACGACCA GGTGTTGGACACTACAGCAATGCTTGGGGCAGTTCCTGCTAGATACGGTTGGAAAGGTGGTGAGATTGGATTTGATGTATACTTCTCCATGGCCAGGGGA AACGCCTCTGTTCCTGCTATGGAAATGACAAAGTGGTTTGACACCAACTACCACTACATTGTGCCCGAGTTGGGACCAGATGTTAACTTTTCATATGCAT CACACAAAGCTGTTGAGGAGTACAAAGAGGCTAAAGCTCTTGGAGTTGATACAGTACCAGTTCTCGTAGGTCCTGTTTCTTACTTGTTGCTTTCAAAACC TGCAAAGGGAGTCGAGAAGAGCTTTTCTCTTCTATCTCTGCTGGACAAAATCATTCCAATTTACAAGCAAGTTTTATCCGATCTAAAGGCAGCTGGTGCT TCCTGGATTCAATTTGATGAACCCAAGCTTGTGATGGATCTTGAGACTCATGAATTAGCAGCATTCACTCGGGCCTACTCAGAACTTGAAACATCTCTAT CTGGTTTGAATGCTCTGGTCGAGACATATTTTGCTGATGTTCCAGCTGAGGCATATAGAGTTCTCACATCTTTGAAGGGTGTTACTGGGTTTGGGTTTGA TCTTGTCCGTGGATCCAGAACCATTGAGCAGATTAAGGGTGGATTCCCTGCTGGTAAATATCTATTTGCCGGCGTGGTAGATGGAAGGAACATCTGGGCT AATGATCTTGCTGCTTCTCTTGAAGCTCTACAAGCTCTTCAGGGAATTGTTGGTAAAGAGAAGCTTGTTGTTTCCTCTTCCTGCTCTCTTCTACATACTG CTGTTGATCTTGTCAATGAGACTAAGTTAGATAAAGAGATAAAGTCATGGCTCGCATTTGCAGCCCAAAAACTACTCGAAGTAAATGCCTTGGCCAAGGA TCTTACTGGACATAGGGATGAGGCTTTCTTCTCCGCTAACGCTACTGCTCTTGCTTCACGAAAATCCTCTCCAAGGGTAACCAACGAGGCTGTCCAGAAC GCTGCTGCTGCGCTAAAGGGTTCTGATCGCCGCCGACCCACTACTGTTAGTGCTAGGCTTGATGCTCAGCAGAAGAAGTTAAACCTTCCAAGTCTTCCAA CAACCACAATCGGATCTTTCCCACAGACCATGGAGCTTAGGAAGGCCCGCCGTGAATACAAGGCTAAGAAGATTTCCGAGGAGGAATATGTTAACTCCAT GAAAGAGGAAATTAGCAAAGTTGTCAAGATCCAAGAAGAACTTGATATTGATGTTTTGGTGCATGGTGAACCAGAGAGAAATGACATGGTTGAATACTTC GGCGAGCAATTGTCTGGCTTTGCCTTCACAGCTAATGGATGGGTCCAGTCCTATGGTTCTCGTTGTGTCAAGCCTCCGATCATTTACGGTGATGTCAGCC GTCCTAAGGCCATGACTGTGTTCTGGTCAAGTACTGCCCAAAGTATGACAAAGCGACCCATGAAAGGAATGCTTACTGGTCCAGTCACCATTTTGAACTG GTCCTTCGTCAGAAATGACCAGCCCAGGCACGAGACCTGTTACCAAATTGCACTTGCTATCAAAGATGAAGTCGAGGATCTCGAGAGGGCCGGGATAACC GTCATCCAGATTGATGAGGCAGCTTTGAGAGAGGGGCTGCCTCTAAGGAAGACTGAGCATGCTTTCTATTTGGATTGGGCTGTACACTCCTTCAGGATCA CCAACTCTACTGTCCAAGATACAACCCAGATTCATACCCACATGTGCTACTCAAACTTCAACGACATCATCCATTCGATCATCAGTATGGATGCTGATGT GATCACAATTGAGAACTCCAGATCAGACGAGAAGCTTCTCTCAGTTTTCCGTGAAGGAGTGAAGTACGGTGCAGGCATTGGCCCTGGTGTGTACGACATT CACTCCCCTAGGATCCCCTCCACCGAAGAAATCGCAGACCGTGTCAGGAAGATGCTTGCTGTCCTTGAGAGCCACGTCCTCTGGGTTAACCCTGATTGTG GCCTCAAGACCCGCAAATACGATGAAGTTAAACCTGCCCTAAGCCACATGGTTGCTGCAGCCAAGCAACTCAGAGCCGAGCTTGCTAAAGCCAAGCTCAG TCCTTCAAGGATTTTGTCTTACAATCTGCAGTTTTCTGCTGGAATAGTGAGCTCTTTCAAACCAGTGTTTCAAGCCGAGTCGAGTCTGCTGAATGTAGTT GCAGAAAGATTTGTTAAGCTTATTCTGAGAAGGTACAAAGCAATGCTGCAGGAGCTATTCCTGAAGAGGAGGTGGGAGTCTCCACAGTACTCGGCCATGA GAGACGGCCCTGATCACATTCCTCGTTTCAAAGCTTCTGTGCTCATCAATGGCCTGTTCTTCCACTCTCCTCCTTCCTGCCTCTCTCTCAAAGAAGCTCA GACTGGAGCTTCCCTCGCTGCATTCAACAGCTTGAGTAAACAGGAGGTTGATTTTGCATCTGGGATTTACAAGAACCTATTGCAGGAGCTAACTGTTAGA AGAATGCTTCCCCAGCCATGTTACAGGACTCTGATGGATGGCCCTCCTCATCTCCCCCCATTCTTCTCCTCTGTAGCAATTGGTTCAGAAACATTCTCCG GGGAAGCAGGAAACTCCAAGAAAGCTGCTGAGATGAATGCTTCCAAGGTCGCTTACACTGCTCTGAAACTTCCTCCTTCTGGTTCTCCTGAAACTGAAGC AAATTTGACAGAACCAGTGCAGTCTCCTGAAGCTTCAAGACTAGTTGAAAAAGCAGTAGCCACTGGGAATCAAACAGTGCCTGAAGATAGTTCCTTGCAT ACTTGTCAGAAGAAAAGAAAGTTCAATACAGTGTGA
AA sequence Show only first row Show all	>Lus10008422 pacid=23163474 polypeptide=Lus10008422 locus=Lus10008422.g ID=Lus10008422.BGIv1.0 annot-version=v1.0 MASHIVGYPRMGPKRELKFALESFWEGKSTAEDLQKVAKDLRSSIWKQMSDAGIKYIPSNTFSYYDQVLDTTAMLGAVPARYGWKGGEIGFDVYFSMARG NASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVEEYKEAKALGVDTVPVLVGPVSYLLLSKPAKGVEKSFSLLSLLDKIIPIYKQVLSDLKAAGA SWIQFDEPKLVMDLETHELAAFTRAYSELETSLSGLNALVETYFADVPAEAYRVLTSLKGVTGFGFDLVRGSRTIEQIKGGFPAGKYLFAGVVDGRNIWA NDLAASLEALQALQGIVGKEKLVVSSSCSLLHTAVDLVNETKLDKEIKSWLAFAAQKLLEVNALAKDLTGHRDEAFFSANATALASRKSSPRVTNEAVQN AAAALKGSDRRRPTTVSARLDAQQKKLNLPSLPTTTIGSFPQTMELRKARREYKAKKISEEEYVNSMKEEISKVVKIQEELDIDVLVHGEPERNDMVEYF GEQLSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSTAQSMTKRPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLERAGIT VIQIDEAALREGLPLRKTEHAFYLDWAVHSFRITNSTVQDTTQIHTHMCYSNFNDIIHSIISMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDI HSPRIPSTEEIADRVRKMLAVLESHVLWVNPDCGLKTRKYDEVKPALSHMVAAAKQLRAELAKAKLSPSRILSYNLQFSAGIVSSFKPVFQAESSLLNVV AERFVKLILRRYKAMLQELFLKRRWESPQYSAMRDGPDHIPRFKASVLINGLFFHSPPSCLSLKEAQTGASLAAFNSLSKQEVDFASGIYKNLLQELTVR RMLPQPCYRTLMDGPPHLPPFFSSVAIGSETFSGEAGNSKKAAEMNASKVAYTALKLPPSGSPETEANLTEPVQSPEASRLVEKAVATGNQTVPEDSSLH TCQKKRKFNTV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17920		ATCIMS, ATMETS,...	methionine synthesis 1, COBALA...		Lus10008422 [exp]	0	1
AT3G59970		MTHFR1	methylenetetrahydrofolate redu...		Lus10025610 [exp]	2.8	0.9274
AT5G11730			Core-2/I-branching beta-1,6-N-...		Lus10005504 [exp]	2.8	0.9271
AT5G11730			Core-2/I-branching beta-1,6-N-...		Lus10005505 [exp]	4.0	0.8977
AT1G63850			BTB/POZ domain-containing prot...		Lus10024658 [exp]	4.5	0.9222
AT4G16360			5'-AMP-activated protein kinas...		Lus10038783 [exp]	7.2	0.8702
AT1G48850		EMB1144	embryo defective 1144, chorism...		Lus10036738 [exp]	7.7	0.9231
AT3G17390		MAT4, SAMS3, MT...	S-ADENOSYLMETHIONINE SYNTHETAS...		Lus10009985 [exp]	9.2	0.9093
AT5G10840			Endomembrane protein 70 protei...		Lus10000222 [exp]	10.0	0.8763
AT5G17920		ATCIMS, ATMETS,...	methionine synthesis 1, COBALA...		Lus10020273 [exp]	11.2	0.9055
AT2G29180			unknown protein		Lus10040781 [exp]	15.0	0.8811

Compare expression of checked genes

Lus10008422 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.