Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24910 440 / 6e-150 ELA1, CYP714A1 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) AT5G24900 408 / 2e-137 ELA2, CYP714A2 EUI-like p450 A2, cytochrome P450, family 714, subfamily A, polypeptide 2 (.1) AT2G46950 308 / 5e-98 CYP709B2 "cytochrome P450, family 709, subfamily B, polypeptide 2", cytochrome P450, family 709, subfamily B, polypeptide 2 (.1) AT3G14640 291 / 3e-92 CYP72A10 "cytochrome P450, family 72, subfamily A, polypeptide 10", cytochrome P450, family 72, subfamily A, polypeptide 10 (.1) AT5G52400 285 / 5e-90 CYP715A1 "cytochrome P450, family 715, subfamily A, polypeptide 1", cytochrome P450, family 715, subfamily A, polypeptide 1 (.1) AT2G46960 281 / 3e-88 CYP709B1 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2) AT3G14690 280 / 5e-88 CYP72A15 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) AT5G38450 280 / 7e-88 CYP735A1 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1) AT2G26710 279 / 1e-87 CYP72B1, CYP734A1, BAS1 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) AT3G14660 279 / 2e-87 CYP72A13 "cytochrome P450, family 72, subfamily A, polypeptide 13", cytochrome P450, family 72, subfamily A, polypeptide 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033555 [exp] 311 / 7e-100 AT5G38450 694 / 0.0 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1) Lus10017595 [exp] 306 / 8e-98 AT5G38450 697 / 0.0 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1) Lus10039234 [exp] 301 / 6e-96 AT5G52400 653 / 0.0 "cytochrome P450, family 715, subfamily A, polypeptide 1", cytochrome P450, family 715, subfamily A, polypeptide 1 (.1) Lus10025756 [exp] 300 / 1e-95 AT2G46950 578 / 0.0 "cytochrome P450, family 709, subfamily B, polypeptide 2", cytochrome P450, family 709, subfamily B, polypeptide 2 (.1) Lus10026085 [exp] 298 / 1e-94 AT2G46960 375 / 6e-125 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2) Lus10004633 [exp] 290 / 5e-92 AT2G26710 378 / 4e-126 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10026084 [exp] 290 / 1e-91 AT2G26710 375 / 6e-125 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10025755 [exp] 299 / 6e-90 AT1G80300 923 / 0.0 nucleotide transporter 1 (.1) Lus10017775 [exp] 288 / 7e-90 AT3G14630 359 / 2e-117 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G026300 [exp] 497 / 2e-172 AT5G24910 486 / 5e-168 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) Potri.008G026200 [exp] 496 / 6e-172 AT5G24910 488 / 8e-169 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) Potri.013G160800 [exp] 480 / 6e-166 AT5G24910 468 / 6e-161 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) Potri.019G064200 [exp] 443 / 3e-151 AT5G24910 652 / 0.0 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) Potri.010G116300 [exp] 401 / 5e-135 AT5G24910 376 / 3e-125 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) Potri.014G052000 [exp] 323 / 2e-107 AT5G24910 241 / 4e-76 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) Potri.004G100400 [exp] 321 / 1e-103 AT5G38450 734 / 0.0 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1) Potri.017G114200 [exp] 321 / 1e-103 AT5G38450 724 / 0.0 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1) Potri.002G134500 [exp] 310 / 5e-99 AT1G75130 540 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Potri.010G139400 [exp] 303 / 1e-96 AT2G26710 402 / 2e-135 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10008423 pacid=23163478 polypeptide=Lus10008423 locus=Lus10008423.g ID=Lus10008423.BGIv1.0 annot-version=v1.0 ATGATGACGACGACGACAATGAAGGAGACGGCGATAGCAGCCGGAACCCTCCTGGGAGCGATACTGGGTTTATTAGGGGCGTACATACCGATCGTCTACA TGTGGAAGCCATGGCGGCTGAGAAGGACGCTGGTGAATCAAGGAGTTAAAGGACCTTCTCCTTCTAATTCCTTCCTCGGCAACATCCCCGACATCAACCG TATTCGTAGTCTCTCCAAAAAACCGGTTGATTCTTCCGGTGACGGCATCGATCACGATTGGCCTTCCGTCCTCTTGCCCCACCTCCGCCTCTGGTTCAAG CAATACGGACCAACATTTGTGTACTCGACTGGGAACATACAGTTACTGTGCACAATTGATGGTGACATGGTGAAGGAGATCAGCCTTTCTACTTCGTTAA GCTTGGGGAGACCTTCTTACCTCTCAAGGGATTTCGGCCCTCTCTTTGGCAACAGCATCATCGCCTCTAGTGGTCCTGTTTGGTCTCATCAGCGCAAGAT CATTGCTCCTCAGTTCTACCTCGACAAGGTTAAGAGCATGGTGAGCCTTATGGTGGAGTCAACCACTTCAGTGTTGACTTCTTGGGGAACTAAAATCGAC GGCAGCAGCGATGGAGGAAAGTTTGCTGATATAAACATAGAGCATGACATAAGAAGCTTATCTGCTGATATAATCTCCAGAGCTTGCTTTGGTAGCAACT ACAAAGCAGGGGAACACATATTCTCCAAGCTTAGAACACTCCAGTCTCTCTTGGCCAAAGGCCACGCTGGAATCCCCGTGTTAAGACACTTGCCGACCGG AAAGAACAGAGAAATATGGAAGCTGGAAAGAGATATCAACTCCATGATTGTGGAAGTAGTCAAGAAAAGAGCGGCTTCTAAATCGGAGAACGACCTTCTC CAAATGATACTAGAAGGGGCTACGGATTCCGGGAGCAATTTGAATGATGCGTCTCTCGACAAGTTCATAGTAGATAACTGCAAAGCCATCTACTTTGCTG GCCAGGATACCACCTCGAATACCGTCTCGTGGACCTTGATGCTGCTGGCATCTCATCCGGAATGGCAAGATCGTGCTCGCGAGGAGGTCCAGCAAGTCTG TGAGGATAAGGTTCCCGATATCCACTCCATCCGAAAAATGAAAACCCTTACAATGGTGATCCAAGAGGCATTGAGGCTATACCCACCAGCCGTGTTCGTG GTCAGGGAAGTGTTACAAGACATCAAGTTCAAGAACATAACGATTCCGAAAGGAATGAACATTCAGGTTCCGATCTCGATCGTACAGAGGAATCCCGAAC TGTGGGGGGCAGATGCACACCTCTTTAACCCTGAAAGGTTTGCGGATGGAATACTCGGCGCTACTAGCGGCGGAAAGAGCAATGCGCAGGCTTACATTCC GTTCGGAGTTGGGGCGAGAGTTTGTGTCGGACAGAACTTTGCGATGATGGAGCTTAAAGTCATTTTGTCCCTCATTCTTCTCAACTTTAGCTTCTCGATC TCACCGTCGTACGATCATTCCCCTGCGTTCGCGCTGGTTGTGCAGCCGGCGCATGGAGTTCGCCTCCTCGTAAAGCGAGTTCCTTCTTGA
AA sequence Show only first row Show all	>Lus10008423 pacid=23163478 polypeptide=Lus10008423 locus=Lus10008423.g ID=Lus10008423.BGIv1.0 annot-version=v1.0 MMTTTTMKETAIAAGTLLGAILGLLGAYIPIVYMWKPWRLRRTLVNQGVKGPSPSNSFLGNIPDINRIRSLSKKPVDSSGDGIDHDWPSVLLPHLRLWFK QYGPTFVYSTGNIQLLCTIDGDMVKEISLSTSLSLGRPSYLSRDFGPLFGNSIIASSGPVWSHQRKIIAPQFYLDKVKSMVSLMVESTTSVLTSWGTKID GSSDGGKFADINIEHDIRSLSADIISRACFGSNYKAGEHIFSKLRTLQSLLAKGHAGIPVLRHLPTGKNREIWKLERDINSMIVEVVKKRAASKSENDLL QMILEGATDSGSNLNDASLDKFIVDNCKAIYFAGQDTTSNTVSWTLMLLASHPEWQDRAREEVQQVCEDKVPDIHSIRKMKTLTMVIQEALRLYPPAVFV VREVLQDIKFKNITIPKGMNIQVPISIVQRNPELWGADAHLFNPERFADGILGATSGGKSNAQAYIPFGVGARVCVGQNFAMMELKVILSLILLNFSFSI SPSYDHSPAFALVVQPAHGVRLLVKRVPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24910		ELA1, CYP714A1	EUI-like p450 A1, cytochrome P...		Lus10008423 [exp]	0	1
AT3G54020		AtIPCS1	Arabidopsis Inositol phosphory...		Lus10021111 [exp]	8.4	0.8876
AT3G54110		ATUCP1, UCP1, U...	ARABIDOPSIS THALIANA UNCOUPLIN...		Lus10021123 [exp]	12.0	0.8865
AT4G31420	C2H2ZnF		Zinc finger protein 622 (.1.2)		Lus10020150 [exp]	12.8	0.8971
AT4G27730		ATOPT6	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10022372 [exp]	25.1	0.8872
AT3G59710			NAD(P)-binding Rossmann-fold s...		Lus10034835 [exp]	33.7	0.8956
AT1G75390	bZIP	ATBZIP44	basic leucine-zipper 44 (.1.2)		Lus10041780 [exp]	34.5	0.8923
AT1G24340		EMB260, EMB2421	EMBRYO DEFECTIVE 260, EMBRYO D...		Lus10011372 [exp]	37.7	0.8594
AT3G48660			Protein of unknown function (D...		Lus10003120 [exp]	39.7	0.8955
AT2G38000			chaperone protein dnaJ-related...		Lus10017189 [exp]	40.8	0.8670
AT2G20470			AGC (cAMP-dependent, cGMP-depe...		Lus10024915 [exp]	43.3	0.8927

Compare expression of checked genes

Lus10008423 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.