Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47580 286 / 9e-98 U1A spliceosomal protein U1A (.1) AT2G30260 222 / 6e-73 U2B'' U2 small nuclear ribonucleoprotein B (.1) AT1G06960 214 / 5e-70 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT1G29400 43 / 0.0002 AML5 MEI2-like protein 5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003358 [exp] 395 / 9e-141 AT2G47580 367 / 7e-130 spliceosomal protein U1A (.1) Lus10042240 [exp] 218 / 4e-71 AT2G30260 352 / 2e-124 U2 small nuclear ribonucleoprotein B (.1) Lus10026413 [exp] 214 / 7e-70 AT2G30260 350 / 1e-123 U2 small nuclear ribonucleoprotein B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G127800 [exp] 335 / 4e-117 AT2G47580 347 / 6e-122 spliceosomal protein U1A (.1) Potri.002G203600 [exp] 330 / 3e-115 AT2G47580 349 / 1e-122 spliceosomal protein U1A (.1) Potri.019G121400 [exp] 221 / 2e-72 AT2G30260 305 / 7e-106 U2 small nuclear ribonucleoprotein B (.1) Potri.013G153700 [exp] 219 / 9e-72 AT2G30260 297 / 8e-103 U2 small nuclear ribonucleoprotein B (.1) Potri.006G224900 [exp] 49 / 9e-07 AT1G21320 122 / 2e-33 nucleotide binding;nucleic acid binding (.1.2) Potri.012G019300 [exp] 46 / 7e-06 AT1G76940 167 / 2e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.015G009000 [exp] 45 / 2e-05 AT1G76940 170 / 8e-53 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G067300 [exp] 45 / 3e-05 AT5G61960 627 / 0.0 MEI2-like protein 1 (.1.2) Potri.003G162700 [exp] 44 / 7e-05 AT5G07290 645 / 0.0 MEI2-like 4 (.1) Potri.012G107100 [exp] 44 / 9e-05 AT5G07290 750 / 0.0 MEI2-like 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10008424 pacid=23163494 polypeptide=Lus10008424 locus=Lus10008424.g ID=Lus10008424.BGIv1.0 annot-version=v1.0 ATGGCGGAGACGAATAATGCACAACCCACCGGGGATGAAGCTACTCCGAACATGACGATCTACATCAACAATCTGAACGAGAAAATCAAACTCGAAGAGC TGAAGAAGTCGCTGCATGCCGTGTTCTCGCAGTTTGGGAAGATCGTGGAGATATTGGCATTCAAGACTCTGAAGCACAAGGGCCAAGCTTGGGTTGTTTT CGAGGATGTTCAATCTGCTACGAATGCCATGAGGCAGATGCAGTCTTTCCCTTTCTACGATAAGCCTATGAGAATACAATATGCAAAAACTAAGTCTGAT GTTATAGCAAAGGCTGATGGAACCTTTGTTCCCAGAGAAAAACGAAAGAGGCATGAAGAGAAAGGAGGGAAAAAGAAGAAGGAACAGCATGATCCAAATC AAATGGCAGTAGGTCTCAGTCCAGCTTATCCTGGTGGTTACAGAGCAGCACCTCCATTATCACAAATACCGTATCCTGGTGTTAGATCTATGGTTCCTGA TGCTCCTGCTCCACCAAATAACATTCTCTTCATTCAAAACCTTCCGAACGAGACTACACCTTTGATGCTGCAAATGCTGTTCCAGCAATACCCTGGTTTT AAGGAGGTGAGAATGGTCGAAGCAAAGCCCGGAATTGCATTCGTCGAGTACGGAGATGAGGGACAGTCTACGGTTGCTATGCAAGGATTGCAGAGTTTTA AGATACAGCAGAACCCCATGTTGGTTACTTACGCCAAAAAATAA
AA sequence Show only first row Show all	>Lus10008424 pacid=23163494 polypeptide=Lus10008424 locus=Lus10008424.g ID=Lus10008424.BGIv1.0 annot-version=v1.0 MAETNNAQPTGDEATPNMTIYINNLNEKIKLEELKKSLHAVFSQFGKIVEILAFKTLKHKGQAWVVFEDVQSATNAMRQMQSFPFYDKPMRIQYAKTKSD VIAKADGTFVPREKRKRHEEKGGKKKKEQHDPNQMAVGLSPAYPGGYRAAPPLSQIPYPGVRSMVPDAPAPPNNILFIQNLPNETTPLMLQMLFQQYPGF KEVRMVEAKPGIAFVEYGDEGQSTVAMQGLQSFKIQQNPMLVTYAKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47580		U1A	spliceosomal protein U1A (.1)		Lus10008424 [exp]	0	1
AT5G37010			unknown protein		Lus10007363 [exp]	3.7	0.8979
AT2G42260		PYM, UVI4	POLYCHOME, uv-b-insensitive 4 ...		Lus10008728 [exp]	6.2	0.8900
AT1G10930		ATSGS1, RECQL4A...	DNA helicase (RECQl4A) (.1)		Lus10015467 [exp]	6.2	0.8857
AT1G52980		AtNug2	nuclear/nucleolar GTPase 2, GT...		Lus10023835 [exp]	9.4	0.8701
AT4G23800		3xHMG-box2, AT4...	3xHigh Mobility Group-box2, HM...		Lus10023090 [exp]	10.2	0.8812
AT5G52850			Pentatricopeptide repeat (PPR)...		Lus10014950 [exp]	11.4	0.8016
AT5G62290			nucleotide-sensitive chloride ...		Lus10038909 [exp]	12.4	0.8642
AT5G57300			S-adenosyl-L-methionine-depend...		Lus10011441 [exp]	14.0	0.7879
AT4G25740			RNA binding Plectin/S10 domain...		Lus10027519 [exp]	14.5	0.8541
AT5G15550			Transducin/WD40 repeat-like su...		Lus10037439 [exp]	15.0	0.8357

Compare expression of checked genes

Lus10008424 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.