Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20970 110 / 6e-28 HSP20-like chaperones superfamily protein (.1) AT2G27140 105 / 1e-26 HSP20-like chaperones superfamily protein (.1) AT1G54400 81 / 8e-18 HSP20-like chaperones superfamily protein (.1) AT5G04890 77 / 1e-15 RTM2 RESTRICTED TEV MOVEMENT 2, HSP20-like chaperones superfamily protein (.1) AT1G53540 55 / 5e-09 HSP20-like chaperones superfamily protein (.1) AT4G10250 48 / 3e-06 ATHSP22.0 HSP20-like chaperones superfamily protein (.1) AT1G07400 45 / 1e-05 HSP20-like chaperones superfamily protein (.1) AT1G59860 45 / 1e-05 HSP20-like chaperones superfamily protein (.1) AT3G10680 45 / 4e-05 HSP20-like chaperones superfamily protein (.1) AT4G21870 41 / 0.0002 HSP20-like chaperones superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003356 [exp] 391 / 1e-136 AT2G27140 103 / 3e-26 HSP20-like chaperones superfamily protein (.1) Lus10032902 [exp] 86 / 1e-19 AT1G54400 89 / 4e-22 HSP20-like chaperones superfamily protein (.1) Lus10028874 [exp] 72 / 2e-13 AT5G04890 103 / 4e-24 RESTRICTED TEV MOVEMENT 2, HSP20-like chaperones superfamily protein (.1) Lus10008946 [exp] 68 / 2e-12 AT5G04890 102 / 3e-24 RESTRICTED TEV MOVEMENT 2, HSP20-like chaperones superfamily protein (.1) Lus10024258 [exp] 59 / 3e-10 AT5G04890 61 / 2e-11 RESTRICTED TEV MOVEMENT 2, HSP20-like chaperones superfamily protein (.1) Lus10000932 [exp] 56 / 1e-08 AT4G10250 200 / 2e-65 HSP20-like chaperones superfamily protein (.1) Lus10040560 [exp] 53 / 5e-08 AT4G10250 200 / 1e-65 HSP20-like chaperones superfamily protein (.1) Lus10042408 [exp] 53 / 6e-08 AT4G10250 154 / 1e-47 HSP20-like chaperones superfamily protein (.1) Lus10026262 [exp] 52 / 1e-07 AT4G10250 152 / 5e-47 HSP20-like chaperones superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G191200 [exp] 139 / 3e-38 AT2G27140 106 / 3e-27 HSP20-like chaperones superfamily protein (.1) Potri.004G191101 [exp] 137 / 2e-37 AT2G27140 109 / 2e-28 HSP20-like chaperones superfamily protein (.1) Potri.009G153100 [exp] 129 / 7e-35 AT2G27140 110 / 5e-29 HSP20-like chaperones superfamily protein (.1) Potri.009G153200 [exp] 126 / 2e-34 AT2G27140 89 / 9e-22 HSP20-like chaperones superfamily protein (.1) Potri.009G153000 [exp] 104 / 6e-26 AT2G27140 79 / 1e-17 HSP20-like chaperones superfamily protein (.1) Potri.004G191000 [exp] 95 / 2e-23 AT2G27140 81 / 2e-19 HSP20-like chaperones superfamily protein (.1) Potri.013G054900 [exp] 89 / 2e-20 AT1G54400 97 / 3e-25 HSP20-like chaperones superfamily protein (.1) Potri.008G013800 [exp] 90 / 6e-20 AT5G04890 135 / 3e-36 RESTRICTED TEV MOVEMENT 2, HSP20-like chaperones superfamily protein (.1) Potri.010G245500 [exp] 84 / 6e-18 AT5G04890 113 / 2e-28 RESTRICTED TEV MOVEMENT 2, HSP20-like chaperones superfamily protein (.1) Potri.019G037700 [exp] 72 / 7e-15 AT1G54400 93 / 5e-24 HSP20-like chaperones superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0190 [flax] [poplar] HSP20 PF00011 [flax] [poplar] HSP20 Hsp20/alpha crystallin family
Representative CDS sequence Show only first row Show all	>Lus10008426 pacid=23163506 polypeptide=Lus10008426 locus=Lus10008426.g ID=Lus10008426.BGIv1.0 annot-version=v1.0 ATGGCTACTGCCCAACAACGATCCTACGAAGACTTCGAACCCACCACCGAATGGAAGCGCGAACCCAATGCCGACACTTTGCTTGTTTACTTGCCCGGGT TCAGGAAAGATCAACTGAAAGTGCAGGTGACATCTTCCCGGCAACTGAGGGTAACCGGAGAACGGCCGTCGGGGAACAACAACAAATGGAGCCGTTTCAA GAAGGAGATGCCAATCGGCTCCAACTACGAAGCTAACGAGATAGGCGCCAGGTTCGACAAAGGCGTACTTTACGTCAAACATCCCAAGCTCATCCCAAAT CCACAGCAACCTGCTGCCACCATCGCCGGCAACCAATTTCCACCACTGCAAAAGCCTCAGCCGCTGCCGCCGAGACCAGCGGCCCCTACTACACCCAGGC CGCCGCCGCCGCCGTTGAGGCCTGTACAGGATCAAAAACCTTCTTCTTCCGCTGGTTCTGGTAATGGTAAGGCTACTCAAGCGGGACCTGCCATGTCGGC AACTGGTCAGCCGACTACTCCGGCGCTACCGGAGCCGTCAATGTGGAAGCTCCCCCGACCAGTACAGGATCAAAAACCTACTTCTTCCGCTGGTTCTGGT AATGGTAAGGCTACTCCAGCGGCACCTGCAATGCCGACAACTGGTCAGCCGATTACGCCGGCGCTACCGGAGCCGTCAATGTGGAAGCTCCCCCCTCCCG AGCCGATTGCTCTTCCTCCGGCTGACAAGAACCAGGAAAAGTACACGACTAATGGGCAGCGGCTGGCAATGCCGGAAATGATCGGCGAGAAGAAAGCTGA TGAACGAAATAGCAGCAGGGGAGATGGGAGCAGTGCTGATAATATTAGAAGGAGAGCATCGTCAATGGTGATGAACAGTGGTGGGAAGTTGAAAGAGGCG GCAATGAGCAGCGGGTCGGGAGTGATGGACATGACGAGGAAGGATCCTAAGAAATTGGTGAACTTAGTTCTGGCTGTAATGGCGGCTGTGGTTATCGTGC TGTTCATGATCAAGAATGTTGCAGTGAAGTCGATCTGCAAGTTCAAAGGGGATTATTATCAGGACGACTTCCTGCAATAA
AA sequence Show only first row Show all	>Lus10008426 pacid=23163506 polypeptide=Lus10008426 locus=Lus10008426.g ID=Lus10008426.BGIv1.0 annot-version=v1.0 MATAQQRSYEDFEPTTEWKREPNADTLLVYLPGFRKDQLKVQVTSSRQLRVTGERPSGNNNKWSRFKKEMPIGSNYEANEIGARFDKGVLYVKHPKLIPN PQQPAATIAGNQFPPLQKPQPLPPRPAAPTTPRPPPPPLRPVQDQKPSSSAGSGNGKATQAGPAMSATGQPTTPALPEPSMWKLPRPVQDQKPTSSAGSG NGKATPAAPAMPTTGQPITPALPEPSMWKLPPPEPIALPPADKNQEKYTTNGQRLAMPEMIGEKKADERNSSRGDGSSADNIRRRASSMVMNSGGKLKEA AMSSGSGVMDMTRKDPKKLVNLVLAVMAAVVIVLFMIKNVAVKSICKFKGDYYQDDFLQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27140			HSP20-like chaperones superfam...		Lus10008426 [exp]	0	1
AT1G60360			RING/U-box superfamily protein...		Lus10022967 [exp]	1.4	0.9602
AT1G68180			RING/U-box superfamily protein...		Lus10001611 [exp]	4.2	0.9364
AT1G23530			unknown protein		Lus10030608 [exp]	4.2	0.9600
AT1G75720			Plant protein of unknown funct...		Lus10036971 [exp]	4.6	0.9509
AT5G24620			Pathogenesis-related thaumatin...		Lus10032914 [exp]	4.6	0.9580
AT1G52570		PLDALPHA2	phospholipase D alpha 2 (.1)		Lus10041787 [exp]	4.9	0.9562
AT5G18970			AWPM-19-like family protein (....		Lus10001116 [exp]	5.5	0.9527
AT5G18970			AWPM-19-like family protein (....		Lus10021949 [exp]	7.3	0.9478
AT1G75260			oxidoreductases, acting on NAD...		Lus10033210 [exp]	7.7	0.9560
AT4G05220			Late embryogenesis abundant (L...		Lus10006754 [exp]	9.1	0.8937

Compare expression of checked genes

Lus10008426 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.