Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G43610 369 / 2e-108 Spc97 / Spc98 family of spindle pole body (SBP) component (.1) AT5G17410 55 / 4e-07 Spc97 / Spc98 family of spindle pole body (SBP) component (.1), Spc97 / Spc98 family of spindle pole body (SBP) component (.2) AT5G06680 54 / 6e-07 ATSPC98, SPC98, ATGCP3 ARABIDOPSIS THALIANA GAMMA TUBULIN COMPLEX PROTEIN 3, spindle pole body component 98 (.1) AT3G53760 49 / 2e-05 ATGCP4 GAMMA-TUBULIN COMPLEX PROTEIN 4 (.1) AT1G80260 46 / 0.0002 EMB1427 embryo defective 1427, Spc97 / Spc98 family of spindle pole body (SBP) component (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003354 [exp] 433 / 5e-138 AT3G43610 274 / 4e-80 Spc97 / Spc98 family of spindle pole body (SBP) component (.1) Lus10003353 [exp] 204 / 4e-61 AT3G43610 136 / 2e-38 Spc97 / Spc98 family of spindle pole body (SBP) component (.1) Lus10013394 [exp] 100 / 2e-24 AT3G43610 71 / 1e-15 Spc97 / Spc98 family of spindle pole body (SBP) component (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G153300 [exp] 923 / 0 AT3G43610 855 / 0.0 Spc97 / Spc98 family of spindle pole body (SBP) component (.1) Potri.010G180700 [exp] 58 / 5e-08 AT5G17410 994 / 0.0 Spc97 / Spc98 family of spindle pole body (SBP) component (.1), Spc97 / Spc98 family of spindle pole body (SBP) component (.2) Potri.001G184450 [exp] 49 / 2e-06 AT3G43610 44 / 9e-06 Spc97 / Spc98 family of spindle pole body (SBP) component (.1) Potri.014G128400 [exp] 51 / 5e-06 AT3G53760 1076 / 0.0 GAMMA-TUBULIN COMPLEX PROTEIN 4 (.1) Potri.016G000100 [exp] 44 / 0.0007 AT1G80260 431 / 3e-137 embryo defective 1427, Spc97 / Spc98 family of spindle pole body (SBP) component (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0540 [flax] [poplar] GCP PF04130 [flax] [poplar] GCP_C_terminal Gamma tubulin complex component C-terminal
Representative CDS sequence Show only first row Show all	>Lus10008428 pacid=23163484 polypeptide=Lus10008428 locus=Lus10008428.g ID=Lus10008428.BGIv1.0 annot-version=v1.0 ATGGCGGTGGATACCAACTTCGGATCCCTATTCGAGAAGCTGAAGGTCGAAGATCCATGGCTTCCTCCGTCTACTTGGGAATCCATACCTTCCCAAAATG CTGCCTCACGTCGCTTACGCTCCTCCCGCCCCGATTCTTCCAGCTCGCCTTCCCTCGCCTCTTCAGTGTCGGAGGCAAGTTTAGTGAAATTAGCGTTGAA TGCTTTGCAAGGAGTTGAATCTTCCCTTATAAGCATTGAGAAGCTCTCTGCTGCCTTTAACGCAGACCCTGCTGATAGAACCTACCTTGGAATTTCTAGT ATATGGAGTCGTTCTTCAAGCACTCAAGCCTTGGCAACGATTCTCAACTCTATTGGCTGCTTTGGATGTTTGGTTTTCCTTCTCAGAAAATTTGTAGAAC ATTTCACTTGTCTGAGCTCTAACGGTTACGGTAATATTGGAGAGGTAGACTATCCTCCTTATAGTTTAGTGAATCAAGCATTTGCTGTTGCTGTTGGGAA GGTTATAGAAGGTTACATTTGTGCTTTGGATACGGTATGTGCTTCAGTGGGTTTAAGACGTTCAACAAAAAGTGTGGATCCCTTTGTTCATCCACCTGAA GGGGGAACACCTCTTACTAGCGTTGTGCATCATGAATTCACCCTGCTGGAAGTTTATCTGCACACAAAGGAATTGGGGACGAGGATTGAAGCTCTTGGGA ACATCTGCAATCTACAGAACATAGCTTTAAGCTTCTCTTCCACTTCATTTGAAGAGTTAGTTGCAAAAGCAAGTGCAGAATTTGTCAATTTTCACAGAGG AGGGAATCTTCTGAGTCACTTGTATGGCCAACTACAGGTTGCTGATCCTGGTCACTATACTCTCTTCAAATTCCTCTTTCTCCGGTCATTTGAACCATAT TATAGTTTCATAAGATCATGGATATTTAAGGCTGAAATCAATGACCCATTTAAGGAATTTTTGGTGGAATATGTGGATAGTTTGGAGCGATGCCTATATG GTAAAGTTGGAATGCCTACTGAAATCAAGGAGCGAGATGGAGTTTCTGTCCCTTGTTTTCTGAAGGGCTTTCTGAGTCCAATAATCAGAGCTGGCCAGCA ATTGCAAGTACTGAAGAAATTGCTTGAATTTAGTACTTATGTTGGTGCCGATAACCATACAAATGATGACTTTCTTCCTAGATGGAATGGAAATTCAAAC TTTCATATGTTTTGCACAACTCCGCTGACTTTCAGCAAGGGATATTTACAAGAAATGGTAATTGCAAGGAGCAACTACTACATTAATTTGCAGGAGAAAA CTGAGAAGCTGTTGACAGGGTTAGAATTCAGGTACCATCAGGAGTCTCACTTCTCTATTCAGGAGGCAGCACCCCATGTTCTTGCTCCTTTATTTCTTGA GATTGGCAATGGAAATGGAAAGATTCTTGACATGGAGGACAGGGCTGGTGACATCACTGATTCAGATTTCTCCAGTATGAAGGAGGAAAATGAAGAATTT GATGTTCTTGATAGATCTCAGCTGTCTGAATGTTCATCTCTAAGTGATTCTGAAGAGGAGACTAATGCTGATGAGCTTACCAGGTTTTCGAATAGTTCTG TTACACATGAGGAAAGATATCTATCTGTTTTGAGTTTTTCTAAGTGCAACACCATCAACAATCCATTACCTAAGCCGATTGAAAGTGAACAATCACTTCT CGACGATAACAAGCCACATGCCATTTTTGAGAAGACGAAGGCCATAGACCAAATGAGTTCGTTTCAAAACGAGACACCTTTTGGCGACTTGTCCACATCC TCTTCTACTTGGGAAGGAAGAGGGTCATATATCTCTGGTACCCCACATTGTTCAACTGAGAATCAGTGGCTGAAAAGACTTGCAAACGAATCTGGGTACA GTTACCTAAATGACTCTTCCCCAAATTGCAAAACAAATTGGGCATTTCTAAGGGGAGATCTGCCTCTTTTTGCTGAGAGCACGTGCAAAAAAAATGGCTT GATAAAGGAAGCTTTAAGTAAGGATTTGCATGTAAATGACAACCGTGCTCCAGACATTTCCAGTAGTTCTCCTAGGGAATCACACTGTGAGTCTGAGTTT CTCAAAGGGAGCCCAAACTCGTGGACACCTAAAAGCTTTCATCTGGTGAGCAAGCCTCTACACGTTGGATCATTAGCTTACTTTAACTTTTCAGCCGTGG TGGACCCTTGTACCTTATCCTTGGAAAAGGTAGATGCCAGTGTAAGGCCTGATTCGCGGGCTCAAATTTTATCTTCTTCCATTGATGCTCCTGCCAGTAT ACTTAGACATGAGAAAAAAAAACACGATGATGAAGCTGGTGTAATTCTTCATAGTGATACTGAATTGCCTTCTGCATGCTCACCTTCATATTGTGAAGAA CGTGCACTAGATGTGACATTACCAGCAGATGTTCGTGGTGCGAGTAGTTGGGAGAAGTTGCTTGGTGCATCTTGTTATACTGGTGATGGAATTTCTGGAG GCCACATGGAGAGCTTACACACAGTGTTCGAGATCCCACTTGATTTTATTGTTGACAAGTGCCTCATGCAGGAAATTTCTCTTCAGAAATCTTTCTTTAA GATCAAGCGTGATCTTGTACATCAAAGCAATTGGGTTTCCAGTGTGTTGTTTTCACTTAGCTATGCCAGGTACAAGTATGTCAGCAAATTGGTTATCAAG CTGCTGGAAGAAGGGTTTGATTTACGAGTGCATTTGCAAGCAATGAGGCGATACTTTTTCATGGAATCAGCAGACTGGGCAGACTTGTTTCTCTTGTCCC TTCAGGATCATAGATGGTCTATTATGGAGGTGAATCAACAAGTCCCAGAAATTCAAGGAATTCTTGAGTTGTCACTTCAACGATCGTCTTGTGAAAGAGA TCCTAACAAGGATCGTTTATTTGTCTACACGAAAGGGAGCGACTCGATGCCCTCGTCGGAAATTGGTGTCAATTCTTTCGACTTTCTTGGTTTGGGTTAC AGAGTGACATGGCCAATCAGTATCATTCTGACTCCAACAGCCCTAAAAATGTATGCTCAGATTTTCAGTTTTCTGATGAAAGTGAAGCTCGCTGTTTCAT CTTTGACAGACATATGGTGCTCTTTGAAGGAGGTCATTCAATTGATTAGAGGAAACCGTGGTTCTGATATGCATCAACAGGAAGTAGGTCCTTGGAATAT GCTGATAAATTTGAGAGTGACATGGCCAATCAGTATCATTCTGACTCCAACAGCCCTAAAAATGTATGCTCAGATTTTCAGTTTTCTGATGAAAGTGAAG CTCGCTGTTTCATCTTTGACAGACATATGGTGCTCTTTGAAGGAGGTCATTCAATTGATTAGAGGAAACCGTGGTTCTGATATGCATCAACAGGAAGTAG GTCCTTGGAATATGCTGATAAATTTGAGATGTTTTCTCTCTGAAGAAGCATGGGGCGTAGCTGGCATCATCGAAAACATATTGCAGTGTGCCTTGGATTT CAAGTCTTGTATTGTCAGTGCCATGAGCGATGTAAGGTTGGACCAGGCAAGCTTGCCCAGCAAGCTTTCTAAGATCAACGTATCGCAGGTGGTTGCGATA AACCGAAAGTTCGAGAGCAACCTGAAAGAATTGCATCTTTGCTATCTGAAGTCACCAAAGCATGGTGAGGCTGGGCTGTCTTGCTTCTGGGGGTATTTAA ACTACAACGGCTACTACTCTGATTTGAACAGTGAGATGGCCTTCCTTGCAATCTAA
AA sequence Show only first row Show all	>Lus10008428 pacid=23163484 polypeptide=Lus10008428 locus=Lus10008428.g ID=Lus10008428.BGIv1.0 annot-version=v1.0 MAVDTNFGSLFEKLKVEDPWLPPSTWESIPSQNAASRRLRSSRPDSSSSPSLASSVSEASLVKLALNALQGVESSLISIEKLSAAFNADPADRTYLGISS IWSRSSSTQALATILNSIGCFGCLVFLLRKFVEHFTCLSSNGYGNIGEVDYPPYSLVNQAFAVAVGKVIEGYICALDTVCASVGLRRSTKSVDPFVHPPE GGTPLTSVVHHEFTLLEVYLHTKELGTRIEALGNICNLQNIALSFSSTSFEELVAKASAEFVNFHRGGNLLSHLYGQLQVADPGHYTLFKFLFLRSFEPY YSFIRSWIFKAEINDPFKEFLVEYVDSLERCLYGKVGMPTEIKERDGVSVPCFLKGFLSPIIRAGQQLQVLKKLLEFSTYVGADNHTNDDFLPRWNGNSN FHMFCTTPLTFSKGYLQEMVIARSNYYINLQEKTEKLLTGLEFRYHQESHFSIQEAAPHVLAPLFLEIGNGNGKILDMEDRAGDITDSDFSSMKEENEEF DVLDRSQLSECSSLSDSEEETNADELTRFSNSSVTHEERYLSVLSFSKCNTINNPLPKPIESEQSLLDDNKPHAIFEKTKAIDQMSSFQNETPFGDLSTS SSTWEGRGSYISGTPHCSTENQWLKRLANESGYSYLNDSSPNCKTNWAFLRGDLPLFAESTCKKNGLIKEALSKDLHVNDNRAPDISSSSPRESHCESEF LKGSPNSWTPKSFHLVSKPLHVGSLAYFNFSAVVDPCTLSLEKVDASVRPDSRAQILSSSIDAPASILRHEKKKHDDEAGVILHSDTELPSACSPSYCEE RALDVTLPADVRGASSWEKLLGASCYTGDGISGGHMESLHTVFEIPLDFIVDKCLMQEISLQKSFFKIKRDLVHQSNWVSSVLFSLSYARYKYVSKLVIK LLEEGFDLRVHLQAMRRYFFMESADWADLFLLSLQDHRWSIMEVNQQVPEIQGILELSLQRSSCERDPNKDRLFVYTKGSDSMPSSEIGVNSFDFLGLGY RVTWPISIILTPTALKMYAQIFSFLMKVKLAVSSLTDIWCSLKEVIQLIRGNRGSDMHQQEVGPWNMLINLRVTWPISIILTPTALKMYAQIFSFLMKVK LAVSSLTDIWCSLKEVIQLIRGNRGSDMHQQEVGPWNMLINLRCFLSEEAWGVAGIIENILQCALDFKSCIVSAMSDVRLDQASLPSKLSKINVSQVVAI NRKFESNLKELHLCYLKSPKHGEAGLSCFWGYLNYNGYYSDLNSEMAFLAI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G43610			Spc97 / Spc98 family of spindl...		Lus10008428 [exp]	0	1
AT5G51200		EMB3142	EMBRYO DEFECTIVE 3142, Protein...		Lus10030088 [exp]	4.0	0.9453
AT5G17020		HIT2, ATXPO1, A...	HEAT-INTOLERANT 2, ARABIDOPSIS...		Lus10025853 [exp]	5.2	0.9308
AT1G27595			unknown protein		Lus10007230 [exp]	5.3	0.9297
AT5G40820		ATATR, ATRAD3, ...	ARABIDOPSIS THALIANA ATAXIA TE...		Lus10023991 [exp]	6.0	0.9376
AT1G33410		NUP160, SAR1, A...	ARABIDOPSIS NUCLEOPORIN 160, S...		Lus10039130 [exp]	8.8	0.9251
AT4G22970		RSW4, AESP	RADIALLY SWOLLEN 4, homolog of...		Lus10006990 [exp]	8.9	0.9286
AT4G24490		ATRGTA1	RAB geranylgeranyl transferase...		Lus10031441 [exp]	10.2	0.9015
AT1G31810		AFH14	Formin Homology 14 (.1)		Lus10023804 [exp]	11.8	0.8974
AT4G27010		EMB2788	EMBRYO DEFECTIVE 2788, unknown...		Lus10041555 [exp]	13.1	0.9180
AT5G11860		SSP5	SCP1-like small phosphatase 5 ...		Lus10037018 [exp]	13.2	0.9017

Compare expression of checked genes

Lus10008428 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.