Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G43600 1584 / 0 AtAO3, atAO-2, AOgamma, AO3, AAO2 Arabidopsis thaliana aldehyde oxidase 3, Arabidopsis thaliana aldehyde oxidase 2, Aldehyde oxidase gamma, aldehyde oxidase 3, aldehyde oxidase 2 (.1) AT1G04580 1563 / 0 ATAO-4, ATAO2, AAO4 ALDEHYDE OXIDASE 2, arabdopsis thaliana aldehyde oxidase 4, aldehyde oxidase 4 (.1) AT2G27150 1554 / 0 AtAAO3, At-AO3, AOdelta, AAO3 Arabidopsis thaliana aldehyde oxidase 3, Aldehyde oxidase delta, abscisic aldehyde oxidase 3 (.1.2) AT5G20960 1536 / 0 AT-AO1, AOalpha, ATAO1, ATAO, AAO1 ARABIDOPSIS THALIANA ALDEHYDE OXIDASE 1, aldehyde oxidase alpha, aldehyde oxidase 1 (.1.2) AT4G34890 473 / 5e-144 ATXDH1 xanthine dehydrogenase 1 (.1) AT4G34900 426 / 4e-127 ATXDH2 A. THALIANA XANTHINE DEHYDROGENASE 2, xanthine dehydrogenase 2 (.1) AT1G02590 73 / 2e-15 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding protein (.1) AT1G50780 54 / 5e-07 2Fe-2S ferredoxin-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013393 [exp] 2573 / 0 AT3G43600 1657 / 0.0 Arabidopsis thaliana aldehyde oxidase 3, Arabidopsis thaliana aldehyde oxidase 2, Aldehyde oxidase gamma, aldehyde oxidase 3, aldehyde oxidase 2 (.1) Lus10019386 [exp] 1624 / 0 AT3G43600 1635 / 0.0 Arabidopsis thaliana aldehyde oxidase 3, Arabidopsis thaliana aldehyde oxidase 2, Aldehyde oxidase gamma, aldehyde oxidase 3, aldehyde oxidase 2 (.1) Lus10040474 [exp] 1533 / 0 AT3G43600 1555 / 0.0 Arabidopsis thaliana aldehyde oxidase 3, Arabidopsis thaliana aldehyde oxidase 2, Aldehyde oxidase gamma, aldehyde oxidase 3, aldehyde oxidase 2 (.1) Lus10011279 [exp] 1341 / 0 AT5G20960 1315 / 0.0 ARABIDOPSIS THALIANA ALDEHYDE OXIDASE 1, aldehyde oxidase alpha, aldehyde oxidase 1 (.1.2) Lus10034306 [exp] 486 / 2e-148 AT4G34890 2127 / 0.0 xanthine dehydrogenase 1 (.1) Lus10023586 [exp] 167 / 4e-47 AT3G43600 209 / 5e-63 Arabidopsis thaliana aldehyde oxidase 3, Arabidopsis thaliana aldehyde oxidase 2, Aldehyde oxidase gamma, aldehyde oxidase 3, aldehyde oxidase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G191300 [exp] 1789 / 0 AT2G27150 1678 / 0.0 Arabidopsis thaliana aldehyde oxidase 3, Aldehyde oxidase delta, abscisic aldehyde oxidase 3 (.1.2) Potri.009G153600 [exp] 1761 / 0 AT3G43600 1741 / 0.0 Arabidopsis thaliana aldehyde oxidase 3, Arabidopsis thaliana aldehyde oxidase 2, Aldehyde oxidase gamma, aldehyde oxidase 3, aldehyde oxidase 2 (.1) Potri.009G054600 [exp] 501 / 4e-154 AT4G34890 2077 / 0.0 xanthine dehydrogenase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02738 [flax] [poplar] Ald_Xan_dh_C2 Molybdopterin-binding domain of aldehyde dehydrogenase PF01315 [flax] [poplar] Ald_Xan_dh_C Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CL0233 [flax] [poplar] SufE_NifU PF03450 [flax] [poplar] CO_deh_flav_C CO dehydrogenase flavoprotein C-terminal domain CL0486 [flax] [poplar] Fer2 PF01799 [flax] [poplar] Fer2_2 [2Fe-2S] binding domain CL0077 [flax] [poplar] FAD_PCMH PF00941 [flax] [poplar] FAD_binding_5 FAD binding domain in molybdopterin dehydrogenase CL0486 [flax] [poplar] Fer2 PF00111 [flax] [poplar] Fer2 2Fe-2S iron-sulfur cluster binding domain
Representative CDS sequence Show only first row Show all	>Lus10008429 pacid=23163483 polypeptide=Lus10008429 locus=Lus10008429.g ID=Lus10008429.BGIv1.0 annot-version=v1.0 ATGGACCCAGGAAGAGACACTGGGATCAGTCAAAAACTGGTCTTTGCCATTAACGGTCGTAGGTTTGAGCTCTCTGATGTCCACCCTTCTTCTACCTTGC TCGACTTTTTGCGTATTCACACTCCTTTCAAGAGTGTCAAGCTCAGTTGCGGCGAAGGCGGTTGTGGAGCATGTGTTGTCCTGCTTTCCAAGTACAATGA TGTACTTGGTCAAGCTGAAGACTTGACAGTAAGTTCATGTCTCACTCTCCTTTGCAGTTTACATGGATGTTCGATCACAACAACCGAAGGCCTCGGAAAT AGCAAAGACGGCTTTCACCCGATTCACGAGAGGTTTGCCGGGTTCCATGCTTCTCAATGTGGCTTCTGCACTCCTGGAATGTGCATGTCCCTCTTTGGCG CATTCGTTAATGCTAACAAAGCAAATGGGCCCGAACCACCTTCGGGGCTGACAGCTGTTGGAGCTGAAAAGGCCATTGCTGGTAATCTCTGTCGTTGTAC TGGATATCGACCTATTGCTGATGCGTGCAAAAGCTTCGCAGTGGACGTTGATGTGGAGGATTTGGGATTCAACTCTTTCGGGAAGACGAGGAAGATGCCT CTATACAGCAATGAACATGGAATCTGTAGGTTCCCTGTGTTTTTGAAATGGGAAGTCAATACTAATCTGTCGTTGGATTCTGATAACCACTGTTGGCTTA CTCCTAAGGGGTTCGGGGAGCTTCAGAACATGTTGAAAAGCATCGAAAATGACATAGGAAACCGGGAGAAGGTGAAGCTTGTGGTTGGTAATACTAGTGT TGGGTATTATAAGGAACGTGAAGACTTTGAAACATACATTGACATCCGGCATATTCCTGATCTTTCTAAGATTAGGCGGGATCAGGAAGGGATCGAAATA GGGGCATCCGTGACCATTTCAAATGCAATTCGTGCTTTAAAGGGTTCTTCTATGGTTTTTAGAAAGATTGCATCTCATATGGAGAAAATAGGCACCGAGT TTGTTCGGAACACAGGCAGCCTAGGGGGGAATCTAGTGATGGCTCAAAGGCAATGGTTTCCTTCCGACATTGCCACGATACTTCTTGGAGCTGATGCGTA TGTGAATCTATGTACCGGAACTAGTTATGAAACTGTTAGCTTAGAAGAGTTCCTTGAAAGACCACCTTTGGATTCAAGAAGTGTGGTTTCAAGTGTCAAA ATCTCTAATTGGGAGCTGGGAAGTAAACTGTTATTTGAAACGTATCGAGCTGCACCACGGCCGAGTGGAAATGCTTTGGCATATGTAAATGCTGCTTTCT TGGCTGAAACTTCGTTCTGTGACTCTTCTGGTGGAACTGTGTTGGATAAATGTCTGCTAGCTTTTGGTGCGTATGGAACGAAACATGCAATTCGAGCGAG AAAAGTTGAGCAGTTATTGGCAGGAAAGGTGCTGACTATGAATCTTCTGTATGAAGCTGTTAATTTGGTGAAGAAAGAAGTGGTACCTGAAGAAGGCGTC AGCAAATCAGCCTATAGGTTAAGTGTGGCTATTGGATTTCTCTTTGAATTTCTGAGTCCCTTGGTGGATACGGCTATTGGAATCTCTATATGTTCTTTAT CCTCAAATGGTGTTAAAGATAAATGTGAAGAAGGTGGCCATGTTAAATTCCCTAGAATATTGTCATCGTCGAGGCAGGTCGTTCAATTGGATAGCGATTA CCGTCCTGTTGGTGAACCGATCGTAAAATCCGGAGCTGCCCTTCAAGCTTCTGGTGAAGCGGTGTATGTTGATGACATTCCCTCCCCTGTAAATTGCCTT CATGGCGCATTCATTTGTAGCACAAAGCCATTAGCTCGAGTAAAGGGCATAGAAGTCAACCCCAAATCACAGTTAAATGGGGTTTCAGCTCTCATTACAT ATAAGGACATTCCGAATGGGGGTAAGAACATAGGTTCTATGACCATCTTTGGACCTGAACCTTTGTTTGCAGATGAGTTTGCTCGCTGTGCTGGTGATCG CATTGCCTTCGTGATCGCTGGTACCCAGAAAGAAGCTGATGCAGCATCACGGCTCGCAAATGTTGATTATGATCTAGAGAATCTGGAAGCCCCTATCTTA ACCGTTGAAGAGGCAGTTGAAAGATCTAGCTTTTTGCAAGTTCCTCCTTTCGTGCTTCCCAAGGAAGTTGGTGACTTCTCTAAAGGAATGACTGAAGCTG ATCATAAGATCCTTTCCGCTGAGATAAAGCTCGACTCTCAATATTACTTCTATTTGGAAACTCAAACTGCGCTTGCTGTGCCCGATGAAGACAACTGTTT GGTAGTTTACAGCTCTTCTCAGTGCCCTGAGTTTGTCCATGCTACAATTGCTCAATGTCTTGGTGTTCCTGAACATAATGTACGTGTAATTACCAGACGA GTTGGAGGTGGCTTTGGTGGGAAGGCCATTAAGTCCATGCCAGTTGCTACAGCCTGTGCGCTTGCTGCTCATGTGTTGCGCCGCCCTGTCAGAATATACG TCGATCGAAAAACCGATATGATGATGGCAGGCGGCAGGCATCCCATGAAAGTAACATACAGCGTCGGTTACAAGTCGAACGGGAAAATCACGGCACTGAA ACTCGACATATTAATCGATGCTGGGATATACACGGATGTAAGTCCCATAATCCCATTGAACTTCATATCCGTCTTTAAAAAATACGACTGGGGTGCTTTA TCTTTCGACATAAAAGTCTGCAAAACCAACACAGTAAGTAGATCAGCAATGCGAGGGCCGGGGGAGGTACAAGGATCGTACATTGCCGAAGCTATAATCG AACACGTAGCCTCTACTTTATCAATGGATGTCCATTGTGTTCGAAAAATCAACCTTCATACACATAAAAGCCTTAACTTGTTCTATCCTGACGGCTCAGG TGATGCTCAGGAGTATACTTTAACTTCGGTGTGGGATAAGTTAGGGATGTCTTCTAGCCATGACCAGAGGATGGAAATGGTAAAGGCGTTTAATAAGCAT AATGTGTGGAGAAAACGAGGAATTTCTCGTGTACCGATAATTCATCCGGTTACAGTGAGGCCTACCCCTGGGAAAGTGAGCATTTTGAGAGATGGTTCTG TTGTGGTTGAAGTTGGAGGGATAGAGCTTGGTCAGGGGCTCTGGACAAAGGTGAAACAAATGACAGCATTTGCTCTTGGGTTGGTAAATTGTGTTGCTGC TGAAGAGTTGTTGGGTAAAGTACGGATAATACAAGCTGATACTCTAAGTATGATTCAAGGCGGGTTTACTACGGGAAGCACTACTTCAGAGTCGAGCTGT GAAGCGGTTAGGCTTTGTTGTGAGATTTTGGTTGAGAGACTGAAACCTCTGAAGGAAAGCTTGCAGAAGGAAATGGGTCCTGTGCAGTGGGAGATGCTTA TTCAACAGGCACATATTCGGGCTGTGAACTTGTCAGCGAGCTCGTTCTTTGCCCCTGATTTTTTGTCTGACCGGTACTTAACGTACGGGGCTGCAATCAG TGAGGTGGAGGTAAACCTACTGACTGGGGAAACAACAATTCTGAGATCAGACATTCTTTATGATTGTGGACGAAGCCTGAACCCTGCAGTGGATTTAGGA CAGATCGAAGGGGCTTTCGTGCAAGGTATAGGGTACTTCATGCTCGAAGAGTACACAACAAACTCACACGGACTAATAACCTCGGACAGCACATGGACGT ACAAGATCCCTACAATAGACACCATACCGAAAGAGTTCAACGTTGAAATACTAAGCAGCGGACATCACAAGAACCGCGTGCTCTCCTCCAAAGCTTCTGG GGAGCCACCATTGCTCTTGGCGTCTTCAGTACACTGTGCTACTAGAGCAGCAGTCAGAGCAGCCCGGGAACAGGTCCGATCGTGGGGTTGCCACGGGGGG ATCGATCCGTGGTTTGATTTGAAAGTGCCTGCTGTGATGCCTATTGTGAAGGAGCATTGTGGACTGGACATTGTAGAGAGGTACTTGAAATGGAAGATGA GCAGTGAAAAAGAATCGCCCCCCTACATTTCGTAA
AA sequence Show only first row Show all	>Lus10008429 pacid=23163483 polypeptide=Lus10008429 locus=Lus10008429.g ID=Lus10008429.BGIv1.0 annot-version=v1.0 MDPGRDTGISQKLVFAINGRRFELSDVHPSSTLLDFLRIHTPFKSVKLSCGEGGCGACVVLLSKYNDVLGQAEDLTVSSCLTLLCSLHGCSITTTEGLGN SKDGFHPIHERFAGFHASQCGFCTPGMCMSLFGAFVNANKANGPEPPSGLTAVGAEKAIAGNLCRCTGYRPIADACKSFAVDVDVEDLGFNSFGKTRKMP LYSNEHGICRFPVFLKWEVNTNLSLDSDNHCWLTPKGFGELQNMLKSIENDIGNREKVKLVVGNTSVGYYKEREDFETYIDIRHIPDLSKIRRDQEGIEI GASVTISNAIRALKGSSMVFRKIASHMEKIGTEFVRNTGSLGGNLVMAQRQWFPSDIATILLGADAYVNLCTGTSYETVSLEEFLERPPLDSRSVVSSVK ISNWELGSKLLFETYRAAPRPSGNALAYVNAAFLAETSFCDSSGGTVLDKCLLAFGAYGTKHAIRARKVEQLLAGKVLTMNLLYEAVNLVKKEVVPEEGV SKSAYRLSVAIGFLFEFLSPLVDTAIGISICSLSSNGVKDKCEEGGHVKFPRILSSSRQVVQLDSDYRPVGEPIVKSGAALQASGEAVYVDDIPSPVNCL HGAFICSTKPLARVKGIEVNPKSQLNGVSALITYKDIPNGGKNIGSMTIFGPEPLFADEFARCAGDRIAFVIAGTQKEADAASRLANVDYDLENLEAPIL TVEEAVERSSFLQVPPFVLPKEVGDFSKGMTEADHKILSAEIKLDSQYYFYLETQTALAVPDEDNCLVVYSSSQCPEFVHATIAQCLGVPEHNVRVITRR VGGGFGGKAIKSMPVATACALAAHVLRRPVRIYVDRKTDMMMAGGRHPMKVTYSVGYKSNGKITALKLDILIDAGIYTDVSPIIPLNFISVFKKYDWGAL SFDIKVCKTNTVSRSAMRGPGEVQGSYIAEAIIEHVASTLSMDVHCVRKINLHTHKSLNLFYPDGSGDAQEYTLTSVWDKLGMSSSHDQRMEMVKAFNKH NVWRKRGISRVPIIHPVTVRPTPGKVSILRDGSVVVEVGGIELGQGLWTKVKQMTAFALGLVNCVAAEELLGKVRIIQADTLSMIQGGFTTGSTTSESSC EAVRLCCEILVERLKPLKESLQKEMGPVQWEMLIQQAHIRAVNLSASSFFAPDFLSDRYLTYGAAISEVEVNLLTGETTILRSDILYDCGRSLNPAVDLG QIEGAFVQGIGYFMLEEYTTNSHGLITSDSTWTYKIPTIDTIPKEFNVEILSSGHHKNRVLSSKASGEPPLLLASSVHCATRAAVRAAREQVRSWGCHGG IDPWFDLKVPAVMPIVKEHCGLDIVERYLKWKMSSEKESPPYIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G43600		AtAO3, atAO-2, ...	Arabidopsis thaliana aldehyde ...		Lus10008429 [exp]	0	1
AT5G20070		ATNUDX19, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10030056 [exp]	3.6	0.8116
AT5G44790		HMA7, RAN1	copper-exporting ATPase / resp...		Lus10031840 [exp]	4.2	0.7976
AT2G20320			DENN (AEX-3) domain-containing...		Lus10022854 [exp]	6.3	0.7744
AT1G15780			unknown protein		Lus10015323 [exp]	14.9	0.7664
AT5G06460		ATUBA2 ,UBA 2	ARABIDOPSIS THALIANA UBIQUITI...		Lus10031292 [exp]	18.5	0.7540
AT5G05660		EBI, ATNFXL2	NFX1-like 2, EARLY BIRD, Arabi...		Lus10040200 [exp]	20.4	0.7836
AT1G09050			unknown protein		Lus10004495 [exp]	21.5	0.7656
AT4G25390			Protein kinase superfamily pro...		Lus10031679 [exp]	24.5	0.7492
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Lus10006650 [exp]	25.7	0.7693
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Lus10018124 [exp]	36.5	0.7187

Compare expression of checked genes

Lus10008429 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.