Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25800 556 / 0 Protein of unknown function (DUF810) (.1) AT2G20010 433 / 2e-143 Protein of unknown function (DUF810) (.1), Protein of unknown function (DUF810) (.2) AT2G33420 331 / 8e-104 Protein of unknown function (DUF810) (.1) AT1G04470 322 / 3e-100 Protein of unknown function (DUF810) (.1) AT5G06970 166 / 1e-44 Protein of unknown function (DUF810) (.1) AT4G11670 99 / 5e-22 Protein of unknown function (DUF810) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013392 [exp] 752 / 0 AT2G25800 589 / 0.0 Protein of unknown function (DUF810) (.1) Lus10012970 [exp] 478 / 9e-167 AT2G20010 568 / 0.0 Protein of unknown function (DUF810) (.1), Protein of unknown function (DUF810) (.2) Lus10034947 [exp] 481 / 2e-161 AT2G20010 1236 / 0.0 Protein of unknown function (DUF810) (.1), Protein of unknown function (DUF810) (.2) Lus10023742 [exp] 312 / 2e-96 AT2G33420 1426 / 0.0 Protein of unknown function (DUF810) (.1) Lus10011785 [exp] 273 / 9e-83 AT2G33420 1256 / 0.0 Protein of unknown function (DUF810) (.1) Lus10026160 [exp] 191 / 8e-53 AT5G06970 1507 / 0.0 Protein of unknown function (DUF810) (.1) Lus10008663 [exp] 187 / 2e-51 AT5G06970 1449 / 0.0 Protein of unknown function (DUF810) (.1) Lus10029581 [exp] 81 / 9e-16 AT4G11670 957 / 0.0 Protein of unknown function (DUF810) (.1) Lus10006312 [exp] 71 / 7e-13 AT4G11670 740 / 0.0 Protein of unknown function (DUF810) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G238200 [exp] 601 / 0 AT2G25800 1446 / 0.0 Protein of unknown function (DUF810) (.1) Potri.018G044200 [exp] 583 / 0 AT2G25800 1442 / 0.0 Protein of unknown function (DUF810) (.1) Potri.018G085900 [exp] 409 / 3e-134 AT2G20010 1166 / 0.0 Protein of unknown function (DUF810) (.1), Protein of unknown function (DUF810) (.2) Potri.008G170200 [exp] 332 / 6e-104 AT2G33420 1382 / 0.0 Protein of unknown function (DUF810) (.1) Potri.010G068000 [exp] 331 / 1e-103 AT2G33420 1437 / 0.0 Protein of unknown function (DUF810) (.1) Potri.001G030100 [exp] 158 / 8e-42 AT5G06970 1437 / 0.0 Protein of unknown function (DUF810) (.1) Potri.001G108400 [exp] 109 / 2e-25 AT4G11670 1097 / 0.0 Protein of unknown function (DUF810) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05664 [flax] [poplar] UNC_13_homolog Unc-13 homolog
Representative CDS sequence Show only first row Show all	>Lus10008430 pacid=23163480 polypeptide=Lus10008430 locus=Lus10008430.g ID=Lus10008430.BGIv1.0 annot-version=v1.0 ATGTCGCTCAGACCCGTCGCTACTGATCTCGAATCACCACTCGGCCAGCTAGCCTCCCAGCTCACCGATTCTGAACTCCGCTCCACCGCCTACGAGATCT TCCTCGCTGTTTCTCGCGCTTCTTCTGGAAAGCTTCTCTCTTCCGCCGCCGACTCTCCAAGCCATCACCATCATTTGGCTCACTCCCCAAGCTCCAGTTC CAATTCCAACTCTTCTCCTTCTCTGCAGCGCTCCCTCACTTCGGCCGCCGCTAGCAAGATGAAGAAAGCTCTTGGTTTGAAATCCCCTGGCTCTGGGTCC AAGAAAAGTCCTGGTTCTGGTTCATCCTCGGGTCAGGACAAGTTGAAGAAACCATTGACGGTGGGTGAGTTGATAAGGACGCAAATGCAAGTCTCTGAGA TGGTTGATTCCAGGATTCGTAAGGCTCTGCTTAGGGTTGCCACTGGTCAGGTTGGAAGGCGAATCGAGATGGTGGTTCTTCCGCTGGAGCTATTGCAGCA GCTGAAGACTTCGGATTTTACTGATCATCAAGAATTCGAATCATGGCAGAAGAGGGCCCTCAAAGTTCTTGAGATTGGACTGCTTTTGCACCCTCGTGTT CCGCTTGATAAGTCCAACCCTACTTCCCAGCGACTTCGTCAAATCATTCATGGAGCTCAGAATCGGCCGCTTGAAACTGGGCGGAACAATGAGTCAATGC AGGTTCTTCGCAGTTCAGTTATGTCACTTGCTAGTAGGTCTGATGGATCAGTTGTGGACATTTCCCATTGGGCTGACGGGATTCCATTCAACCTCCGTCT TTATGAAATGTTATTGGAAGCCTGCTTTGATGTTAACGATGACACTTCTATGATTGACGAAGTTGATGAACTCATGGAATATATAAAGAAGACTTGGACC ATACTTGGTATTAATAAGATGCTGCATAACCTTTGCTATACTTGGGTTTTGTTTCATCGTTTTGTCGTTACTGGCCAAGTAGAAACGGGCCTGCTGGATG CTGTTGAGGGTCAGCTATTAGAAGTTGCGAAAGATGCCAAGACGACAAAGGATTCAGAGTATTCCAAGGTTTTGAGTTCTACTTTGACTGCCATACTGGG TTGGGCTGAGCAAAGGCTGTTTGCTTATCATGATACTTTTGATAATGCAAATTCCGAGACCATGCAAAGTATTGTTTCTTTGGGTGTTTATGCTGCTAAA ATTTTGGTTGAAGATATATCCAATGAGTACCGGCGGAGAAGGAAAAATGAGGTGGATGTTGCTCGTAGTCGGGTTGACACCTACATCAGGTCATCCCTCC GTACTGCTTTTGCTCAGGCAAGTCTATACTAG
AA sequence Show only first row Show all	>Lus10008430 pacid=23163480 polypeptide=Lus10008430 locus=Lus10008430.g ID=Lus10008430.BGIv1.0 annot-version=v1.0 MSLRPVATDLESPLGQLASQLTDSELRSTAYEIFLAVSRASSGKLLSSAADSPSHHHHLAHSPSSSSNSNSSPSLQRSLTSAAASKMKKALGLKSPGSGS KKSPGSGSSSGQDKLKKPLTVGELIRTQMQVSEMVDSRIRKALLRVATGQVGRRIEMVVLPLELLQQLKTSDFTDHQEFESWQKRALKVLEIGLLLHPRV PLDKSNPTSQRLRQIIHGAQNRPLETGRNNESMQVLRSSVMSLASRSDGSVVDISHWADGIPFNLRLYEMLLEACFDVNDDTSMIDEVDELMEYIKKTWT ILGINKMLHNLCYTWVLFHRFVVTGQVETGLLDAVEGQLLEVAKDAKTTKDSEYSKVLSSTLTAILGWAEQRLFAYHDTFDNANSETMQSIVSLGVYAAK ILVEDISNEYRRRRKNEVDVARSRVDTYIRSSLRTAFAQASLY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25800			Protein of unknown function (D...		Lus10008430 [exp]	0	1
AT1G35220			unknown protein		Lus10036487 [exp]	1.0	0.9786
AT1G35220			unknown protein		Lus10010355 [exp]	2.8	0.9590
AT1G13860		QUL1	QUASIMODO2 LIKE 1 (.1.2.3.4)		Lus10037101 [exp]	5.3	0.9235
AT4G32640			Sec23/Sec24 protein transport ...		Lus10000939 [exp]	5.5	0.9464
AT2G21390			Coatomer, alpha subunit (.1)		Lus10037538 [exp]	6.2	0.9514
AT5G54440		CLUB, AtTRS130	CLUB (.1)		Lus10021680 [exp]	6.7	0.9478
AT5G24710			Transducin/WD40 repeat-like su...		Lus10040563 [exp]	7.2	0.9483
AT3G50590			Transducin/WD40 repeat-like su...		Lus10002967 [exp]	9.5	0.9443
AT3G59770		AtSAC9, SAC9	ARABIDOPSIS THALIANA SUPPRESSO...		Lus10043474 [exp]	12.0	0.9378
AT3G08530			Clathrin, heavy chain (.1)		Lus10007499 [exp]	14.1	0.9345

Compare expression of checked genes

Lus10008430 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.