Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25800 858 / 0 Protein of unknown function (DUF810) (.1) AT2G20010 699 / 0 Protein of unknown function (DUF810) (.1), Protein of unknown function (DUF810) (.2) AT2G33420 393 / 6e-126 Protein of unknown function (DUF810) (.1) AT1G04470 379 / 2e-120 Protein of unknown function (DUF810) (.1) AT5G06970 278 / 1e-82 Protein of unknown function (DUF810) (.1) AT4G11670 182 / 3e-49 Protein of unknown function (DUF810) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013391 [exp] 953 / 0 AT2G25800 756 / 0.0 Protein of unknown function (DUF810) (.1) Lus10034947 [exp] 709 / 0 AT2G20010 1236 / 0.0 Protein of unknown function (DUF810) (.1), Protein of unknown function (DUF810) (.2) Lus10012969 [exp] 529 / 0 AT2G25800 545 / 0.0 Protein of unknown function (DUF810) (.1) Lus10011785 [exp] 372 / 3e-119 AT2G33420 1256 / 0.0 Protein of unknown function (DUF810) (.1) Lus10023742 [exp] 376 / 4e-119 AT2G33420 1426 / 0.0 Protein of unknown function (DUF810) (.1) Lus10029581 [exp] 253 / 1e-73 AT4G11670 957 / 0.0 Protein of unknown function (DUF810) (.1) Lus10026160 [exp] 250 / 1e-72 AT5G06970 1507 / 0.0 Protein of unknown function (DUF810) (.1) Lus10006312 [exp] 236 / 4e-68 AT4G11670 740 / 0.0 Protein of unknown function (DUF810) (.1) Lus10008663 [exp] 216 / 1e-60 AT5G06970 1449 / 0.0 Protein of unknown function (DUF810) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G238200 [exp] 922 / 0 AT2G25800 1446 / 0.0 Protein of unknown function (DUF810) (.1) Potri.018G044200 [exp] 902 / 0 AT2G25800 1442 / 0.0 Protein of unknown function (DUF810) (.1) Potri.018G085900 [exp] 750 / 0 AT2G20010 1166 / 0.0 Protein of unknown function (DUF810) (.1), Protein of unknown function (DUF810) (.2) Potri.008G170200 [exp] 380 / 3e-121 AT2G33420 1382 / 0.0 Protein of unknown function (DUF810) (.1) Potri.010G068000 [exp] 379 / 9e-121 AT2G33420 1437 / 0.0 Protein of unknown function (DUF810) (.1) Potri.001G030100 [exp] 259 / 5e-76 AT5G06970 1437 / 0.0 Protein of unknown function (DUF810) (.1) Potri.001G108400 [exp] 223 / 4e-63 AT4G11670 1097 / 0.0 Protein of unknown function (DUF810) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05664 [flax] [poplar] UNC_13_homolog Unc-13 homolog
Representative CDS sequence Show only first row Show all	>Lus10008431 pacid=23163475 polypeptide=Lus10008431 locus=Lus10008431.g ID=Lus10008431.BGIv1.0 annot-version=v1.0 ATGGAGATGGCAGACTCAAGCAGACGAGCACCCAAGAACCACCGGAATAATCTTCCTCTTCTTGCAATCCTTGCAAAAGATGTTGGTGAGCTGGCCGTTA AGGAAAAGCGAGTATTTAGTCCAATACTCAAGAGATGGCACCCTTTTGCAGCAGGGGTTGCTGTGGCCACTCTGCATGTTTGCTATGGAAATGAGCTCAA ACAATTTATTTCTGGGATAACAGAATTGACACCAGATGCAGTAAAAGTACTTCGTGCAGCTGATAAGTTGGAGCAGGATCTGGTACAGATTGCTGTTGAG GATTCAGTGGATAGTGATGATGGCGGGAAAGCCATAATTCGTGAGATGCCCCCCTTTGAGGCTGAAGCTGCGATTGCCAACCTTGTGAAAATTTGGATCA AATCAAGACTGGACAGAGTGAAGGAGTGGATTGACAGAAACATACAACAAGAGGTCTGGGATCCACAGGCAAGTCCAGAAGGATTTGCTCCATCAGGAGT TGAAGTGCTAAGGATTATAGATGAAGCATTGGACGCATATTTTCAGCTACCAATACCGATGCATCCAGCATTGCTACCTGACTTGATGACAGGCCTTGAT AGATGTCTTCAGTATTATGCAACTAAGGCAAAATCTGGCTGCGGATCACGAAATACTTATGTTCCAACAATGCCAGCATTAACCAGGTGTGAAACAGGGT CAAAGTTTCAAGGTGTGTGGAAGAAGAAGGAGAAGTCGATAAATGGTATGAAGAGGACAAATCCCCAGGTTGCAACAGTGAACGGGGATAGTTCATTTGG AGTACCACAGCTATGTTTGCGTATTTCTACTTTGCATCGAATTCGATCTGAGTTGGAGGGTCTAGAGAAGAGAATAATAACCCATCTGCGGAACTCAGAG TCCGCTGAAGTTGAAGATTTTTCAAATGGGTTGGCAAAGAAGTTTGAACTCACTCCAGATGCTTGTGTTAAAGGAGTTCAACAACTCAGCGAAGCATTGG GATATAAAGTTGTATTCCATGATCTGAGTAACGTTCTTTGGGATGGCTTATATGTGGGAGAACCATCAACCAGCAGGATTGAGCCTTTCCTTCAAGAACT AGAGAGGACGTTAACGATCATTGCCGATACTATTGATGAAAGAGTCCGTACTCGGGTTATTACTGACATAATGAGAGCTTCCTTGGACGGATTCCTACTT GTCTTGCTTTCTGGTGGTCCCTCTCGTGCTTTCTCTCGCCAAGACTCTGCAATAATCGAAGAGGACTTCAAAGCCCTTAAAGATCTATTCTGGGCTAATG GGGATGGCATACCTTCTGAACTAATCGATAAATTTTCAGTCACGGTAAGAGGCGTTCTTCCCTTGTTCCGGATGGATACTGAAAGTCTCATCGAGCGGTT CAGACGTGAGACACTTGAAGCATATGGGGCTGCTGCAAGATCCAAACTTCCACTACCTCCAACATCTGGGCAGTGGGATCCCACTGAACCAAACACACTT TTACGCGTGTTATGCTACCGAAACGATGAAGCTGCTACGAGGTTCCTCAAGAAGACGTACAATTTGCCAAAGAAGCTGTAG
AA sequence Show only first row Show all	>Lus10008431 pacid=23163475 polypeptide=Lus10008431 locus=Lus10008431.g ID=Lus10008431.BGIv1.0 annot-version=v1.0 MEMADSSRRAPKNHRNNLPLLAILAKDVGELAVKEKRVFSPILKRWHPFAAGVAVATLHVCYGNELKQFISGITELTPDAVKVLRAADKLEQDLVQIAVE DSVDSDDGGKAIIREMPPFEAEAAIANLVKIWIKSRLDRVKEWIDRNIQQEVWDPQASPEGFAPSGVEVLRIIDEALDAYFQLPIPMHPALLPDLMTGLD RCLQYYATKAKSGCGSRNTYVPTMPALTRCETGSKFQGVWKKKEKSINGMKRTNPQVATVNGDSSFGVPQLCLRISTLHRIRSELEGLEKRIITHLRNSE SAEVEDFSNGLAKKFELTPDACVKGVQQLSEALGYKVVFHDLSNVLWDGLYVGEPSTSRIEPFLQELERTLTIIADTIDERVRTRVITDIMRASLDGFLL VLLSGGPSRAFSRQDSAIIEEDFKALKDLFWANGDGIPSELIDKFSVTVRGVLPLFRMDTESLIERFRRETLEAYGAAARSKLPLPPTSGQWDPTEPNTL LRVLCYRNDEAATRFLKKTYNLPKKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25800			Protein of unknown function (D...		Lus10008431 [exp]	0	1
AT5G05010			clathrin adaptor complexes med...		Lus10017131 [exp]	7.5	0.8701
AT3G13772		AtTMN7	transmembrane nine 7 (.1)		Lus10037643 [exp]	8.8	0.8683
AT1G67930			Golgi transport complex protei...		Lus10020754 [exp]	13.1	0.8671
AT1G78240		OSU1, TSD2, QUA...	TUMOROUS SHOOT DEVELOPMENT 2, ...		Lus10036485 [exp]	14.1	0.8581
AT3G42050			vacuolar ATP synthase subunit ...		Lus10005658 [exp]	15.5	0.8254
AT2G17980		ATSLY1	Sec1/munc18-like (SM) proteins...		Lus10023936 [exp]	15.7	0.8652
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Lus10042497 [exp]	24.7	0.8502
AT3G07950			rhomboid protein-related (.1)		Lus10041408 [exp]	28.7	0.8538
AT1G29150		RPN6, ATS9	REGULATORY PARTICLE NON-ATPASE...		Lus10036805 [exp]	29.4	0.8475
AT1G67930			Golgi transport complex protei...		Lus10007330 [exp]	29.7	0.8372

Compare expression of checked genes

Lus10008431 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.