Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20950 851 / 0 Glycosyl hydrolase family protein (.1.2) AT5G04885 796 / 0 Glycosyl hydrolase family protein (.1) AT5G20940 771 / 0 Glycosyl hydrolase family protein (.1) AT3G47000 628 / 0 Glycosyl hydrolase family protein (.1) AT3G47010 611 / 0 Glycosyl hydrolase family protein (.1.2) AT3G47040 607 / 0 Glycosyl hydrolase family protein (.1.2) AT3G62710 600 / 0 Glycosyl hydrolase family protein (.1) AT3G47050 595 / 0 Glycosyl hydrolase family protein (.1.2) AT5G64570 115 / 1e-26 ATBXL4, XYL4 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1) AT5G09730 108 / 3e-24 ATBXL3, XYL3, BXL3, ATBX3 beta-xylosidase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013390 [exp] 1094 / 0 AT5G20950 935 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10001151 [exp] 956 / 0 AT5G20950 911 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10013646 [exp] 842 / 0 AT5G20950 941 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10010657 [exp] 811 / 0 AT5G20950 889 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10022413 [exp] 811 / 0 AT5G20950 837 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10023604 [exp] 797 / 0 AT5G20950 822 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10033393 [exp] 793 / 0 AT5G04885 964 / 0.0 Glycosyl hydrolase family protein (.1) Lus10010656 [exp] 783 / 0 AT5G20950 897 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10005706 [exp] 766 / 0 AT5G04885 863 / 0.0 Glycosyl hydrolase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G153900 [exp] 952 / 0 AT5G20950 937 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.019G037400 [exp] 897 / 0 AT5G20950 926 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.013G055600 [exp] 887 / 0 AT5G20950 932 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.008G013500 [exp] 868 / 0 AT5G04885 966 / 0.0 Glycosyl hydrolase family protein (.1) Potri.008G013700 [exp] 866 / 0 AT5G20950 901 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.009G042800 [exp] 639 / 0 AT3G47000 934 / 0.0 Glycosyl hydrolase family protein (.1) Potri.005G059200 [exp] 353 / 1e-118 AT5G04885 385 / 8e-131 Glycosyl hydrolase family protein (.1) Potri.009G154701 [exp] 268 / 1e-86 AT5G04885 286 / 6e-94 Glycosyl hydrolase family protein (.1) Potri.009G154802 [exp] 266 / 4e-85 AT5G04885 232 / 5e-72 Glycosyl hydrolase family protein (.1) Potri.009G154032 [exp] 234 / 1e-73 AT5G20940 254 / 7e-82 Glycosyl hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00933 [flax] [poplar] Glyco_hydro_3 Glycosyl hydrolase family 3 N terminal domain CL0058 [flax] [poplar] PF01915 [flax] [poplar] Glyco_hydro_3_C Glycosyl hydrolase family 3 C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10008432 pacid=23163502 polypeptide=Lus10008432 locus=Lus10008432.g ID=Lus10008432.BGIv1.0 annot-version=v1.0 ATGGGGAGAGCTTTATTTGCTAGATCGAGCATCTTGCTTCTTCTGCTAGTAGTGTTACTAGCAGGAGAGGCAGCAGCTTCAGCTGGGTCAAATTACTTGA AGTACAAGGACCCAAAACAGCCTGTCGGTGCTAGAATCAAAGACCTGCTCAAGAGGATGACTGTTGAAGAAAAAGTTGGGCAGATGGTTCAGATTGATCG ATTAGTATCGTCCCCTGATGTGATGAAGAAGTATTTCCTTGGGAGTGTGCTGAGTGGCGGAGGGAGTGTTCCAGCTAAAAAGGCCTCAGCTGAACAATGG GTGAACATGGTGAATGGGTTGCAGAAGGGAGCTCTATCGACCCGACTTGGAATCCCAATGATTTATGGGATTGATGCAGTCCATGGTCACAACAATGTCT ATAAGGCTACAATCTTCCCTCACAATATTGGAGATGCAACCGCCAAGGAAGTTAGAGCCACTGGCATCCCATATGCTTTTGCTCCATGTATTGCAGTGTG CAGAGATCCAAGATGGGGTCGGTGCTACGAGAGCTATAGTGAAGATCACACCATTGTTCAAAAGATGACAGAAATCATACCCGGTTTACAAGGAGATATT CCTGCTAACTCCAGAAAGGGTGTTCCCTTTGTCGACAATGGAGGGACCAAGGTTGCAGCCTGTGCTAAGCACTATGTGGGGGATGGTGGAACAACTAAAG GCATCAACGAAAACAACACGGTTATCCCTTCGAATGAACTGATGAGTATCCACATGCCAGCATACTTCAACTCCATTAGCAAAGGTGTCGCGACGGTTAT GGTATCGTACTCCAGTTGGAATGGAAAGAAGATGCACGCCAATCATGAACTCGTCACAGGATTCCTCAAGGAGAAAATGAAGTTCAGAGGCTTTGTGATT TCCGACTGGCAAGGAATTGACAGGATTACTTCTCCTCCACATGTCAACTATTCCTCTTCCGTCACAGCAGGAGTTAGCGCAGGAATCGACATGGTCATGG TTGCCTACAACTACACAGAATTCATTAATATTCTAACCTATCAAGTGAAGAACAAAATTATACCAATGAGTAGGATTGATGATGCCGTGCAAAGAATCCT GAGAGTTAAGTTCATCATGGGCTTGTTCGAGAAACCAATCGCCGATTACAGTTTAGCTAACGAGATTGGGAAACAGGAGCATAGAGACATAGCTAGGGAA GCTGTAAGGAAGTCACTTGTACTCTTGAAGAATGGCAAAGCTGCTGCAAAGCCATTGTTGCCCCTTCCTAAGAAAGCACCGAAGATTCTCGTTGCCGGAA GCCACGCCGACAACTTGGGGAACCAATGCGGAGGATGGACGATCGAATGGCAAGGTGTCACCGGCAACGATGTGACAGCTGGTACCACAATCCTCAATGG GGTGAAAAGCGTGGTGGACCCCACGACGCAAGTTGTCTACAGCGAGAGCCCTGACGCGAACTTTGTCAAGTCAAACAAGTTTTCCTACGCAATTGTCGTC GTCGGTGAGCCACCTTACTCAGAGACACAAGGCGATAGCTTGAACCTGACGATACCGGCAGCTGGGCTCAGCACCATCAACAACGTATGTGGAACAGTGC AATGTGTTGTGGTTCTGATCACGGGGCGGCCGGTCGTGATCCAGCCTTACCTTGGTAAGATCGACGCCCTTGTAGCTGCCTGGCTCCCGGGAAGCGAAGG CCAAGGCGTTACGGACGTCTTGTTTGGTGACTATGGGTTCACAGGGAAGCTGGCAAGGACGTGGTTCAAGTCGGTTGATCAACTTCCGATGAACGTCGGT GACCCTCATTACGACCCACTGTTCCCATTCGGGTTTGGCCTCACTACTGAGCCTGTCAAGGCCTAG
AA sequence Show only first row Show all	>Lus10008432 pacid=23163502 polypeptide=Lus10008432 locus=Lus10008432.g ID=Lus10008432.BGIv1.0 annot-version=v1.0 MGRALFARSSILLLLLVVLLAGEAAASAGSNYLKYKDPKQPVGARIKDLLKRMTVEEKVGQMVQIDRLVSSPDVMKKYFLGSVLSGGGSVPAKKASAEQW VNMVNGLQKGALSTRLGIPMIYGIDAVHGHNNVYKATIFPHNIGDATAKEVRATGIPYAFAPCIAVCRDPRWGRCYESYSEDHTIVQKMTEIIPGLQGDI PANSRKGVPFVDNGGTKVAACAKHYVGDGGTTKGINENNTVIPSNELMSIHMPAYFNSISKGVATVMVSYSSWNGKKMHANHELVTGFLKEKMKFRGFVI SDWQGIDRITSPPHVNYSSSVTAGVSAGIDMVMVAYNYTEFINILTYQVKNKIIPMSRIDDAVQRILRVKFIMGLFEKPIADYSLANEIGKQEHRDIARE AVRKSLVLLKNGKAAAKPLLPLPKKAPKILVAGSHADNLGNQCGGWTIEWQGVTGNDVTAGTTILNGVKSVVDPTTQVVYSESPDANFVKSNKFSYAIVV VGEPPYSETQGDSLNLTIPAAGLSTINNVCGTVQCVVVLITGRPVVIQPYLGKIDALVAAWLPGSEGQGVTDVLFGDYGFTGKLARTWFKSVDQLPMNVG DPHYDPLFPFGFGLTTEPVKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20950			Glycosyl hydrolase family prot...		Lus10008432 [exp]	0	1
AT1G33110			MATE efflux family protein (.1...		Lus10013626 [exp]	3.9	0.9020
AT3G18080		BGLU44	B-S glucosidase 44 (.1)		Lus10009644 [exp]	6.4	0.8597
AT1G67420			Zn-dependent exopeptidases sup...		Lus10015792 [exp]	11.8	0.8975
AT5G23535			KOW domain-containing protein ...		Lus10042614 [exp]	17.8	0.8888
AT1G43710		EMB1075	embryo defective 1075, Pyridox...		Lus10028592 [exp]	18.7	0.8963
AT4G28360			Ribosomal protein L22p/L17e fa...		Lus10037603 [exp]	19.6	0.8861
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10035650 [exp]	21.4	0.8958
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10007267 [exp]	25.8	0.8887
AT3G21820		SDG36, ATXR2	SET DOMAIN PROTEIN 36, histone...		Lus10015102 [exp]	28.1	0.8854
AT5G59850			Ribosomal protein S8 family pr...		Lus10029461 [exp]	28.6	0.8820

Compare expression of checked genes

Lus10008432 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.