Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50390 672 / 0 EMB3141 EMBRYO DEFECTIVE 3141, Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G02010 394 / 3e-128 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G03880 384 / 7e-127 REME1 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G13770 384 / 2e-126 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G23330 379 / 1e-123 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G04780 375 / 6e-123 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G26782 371 / 2e-121 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02750 369 / 6e-119 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 363 / 6e-118 MEF22 mitochondrial editing factor 22 (.1) AT4G13650 370 / 5e-117 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013389 [exp] 1030 / 0 AT5G50390 785 / 0.0 EMBRYO DEFECTIVE 3141, Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10040504 [exp] 399 / 2e-132 AT3G13770 904 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015414 [exp] 404 / 8e-131 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 397 / 3e-128 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035788 [exp] 389 / 1e-126 AT3G16610 636 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10029436 [exp] 381 / 1e-124 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035164 [exp] 379 / 3e-122 AT3G02010 962 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031994 [exp] 379 / 3e-122 AT3G02010 957 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022629 [exp] 373 / 7e-122 AT2G41080 723 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G095100 [exp] 749 / 0 AT5G50390 865 / 0.0 EMBRYO DEFECTIVE 3141, Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.016G051300 [exp] 407 / 2e-135 AT3G13770 908 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G091600 [exp] 394 / 1e-129 AT4G37170 924 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G001200 [exp] 388 / 8e-129 AT3G24000 798 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G136200 [exp] 392 / 3e-128 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.013G152000 [exp] 389 / 2e-127 AT3G12770 931 / 0.0 mitochondrial editing factor 22 (.1) Potri.004G208000 [exp] 386 / 6e-127 AT2G03880 939 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G066100 [exp] 389 / 1e-126 AT5G13270 977 / 0.0 REQUIRED FOR ACCD RNA EDITING 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G018700 [exp] 389 / 1e-125 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G075000 [exp] 381 / 5e-125 AT2G41080 755 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10008433 pacid=23163518 polypeptide=Lus10008433 locus=Lus10008433.g ID=Lus10008433.BGIv1.0 annot-version=v1.0 ATGAGGAACAGAATCCTACTCATGCATGTGAAATTAGGCCTAAAGGATGATGCCCGGTGCTTGTTCGATGAAATGCCTGAGAAGAATCTAGTTTCATGGA CTACCATCATTGGGGGGCTTCTGGATAAGGGACAACATTTGGAAGGGTTTAAATTGTTCTTGATCATGTGGGAGGAGCTTTCTGAATGCGATCCACGATT ATTTTCTACGATTATCAGAGGTTGTGCTGGACTCGGTTCGGTTTCTGTCGGGAAGCAATTACACGCCTGCACGGCGAAAATGGGGATGAGTGCGAATATA TTCGTTTCATGTTCACTGATTGATATGTATAGTAAATGTGGAAGCATTGAAGAGGCTCGTTTCGCCTTTGAAGATATGCCGGATAAAACTACTGTAGGAT GGAATATAATCATCACGGGTTATTCTCTTCATGGTTATAGTGAAGAAGCCCTGGATATGTTCTTTCGGATGCGTGAGTCCGGTGTTAAGATAGATCATTT CACCATTTCGTTAATCGTCAGGATCTCTACGAGGCTGGCTTCTTTGGATTATGCCAAGCAAGCTCATGCTGCTTTGTTACGACATGGCTACGCATCGGAT ATGATAGCAAACGCTAGTTTTGTCGACTTCTACAGCAAATGGGGAAGAATAGAATACGCTCAGAATGTTTTCGAGCAGATGCCTCGTAAGGATGTGGAAT CCTGGAACGCCTTGATTTCTGGATACAGTAATCGCGGCAAAGGTGCTAAAGCACTCGCGTTGTTCCACCGTATGCTCGAAGAAAAAGTTCGGCCAAGTCA CATCACGTTTCTTGCTGTGTTATCCGCATGTTGCTATTCAAATTTATCAGACGAAGGATGGGAGATTTTTACAGAGATGGAGGAGAATTTTGGGATTAAG CCTCGGGCAATGCACTTTGCCATCATGATCGAACTTCTCAGTAGGAAGGGTTTAGTCGATGAAGCTTTCGCTCTTGTTCGAGATGCACCGTTCGAACCAA CAGAGAATATGTGGGCCGCGCTTTTGACAGCTTGTCGAGTTCATAAGAATCTGGAGCTTGGAAGGTACGCTGCTGAGAAACTCTATGGAATGGAACCGGA AAAGGTTCACAACTACTTGGTTCTTCTCAACATACACAAGAGTTCGGGGAATTCAAAGGAAGCTGCAGCAGTGCTCCACACGTTGCGAAGAAAATGTATG GAAATCCGTCCAGCTTGCAGCTGGATCAAGATTAGGAGACAAACACACGAGTTTAAATTCGGAGAAAAGTGCCATCCGTGGAGTAAGGAGGTTCATGAGA AGGTGGATGAGTTGAGGAAACAAATATCGAATTACGGTTACGTTCATGGGGAGGAAATGGTGATGCCGGACGTGGATGATAAAGATCAGAGGAAGTCCTC GGTGCTGCATAGCGGAATGCTGGCTGTTGCTTTTGGTTTGATGAACACTCCTTGGTGGGTGCAATTGCAGGTGGTTCAGAGCCACCGGACTTGCAGGGAC TGTCACGAGGCGATCAAATTGATAGGGATGATGAATAAGAGGGAGATTGTGGTTAGAGACGGCGGTAGATTCCATCATTTCAAAGATGGCCATTGTTCCT GCGGAGATTACTGGTAA
AA sequence Show only first row Show all	>Lus10008433 pacid=23163518 polypeptide=Lus10008433 locus=Lus10008433.g ID=Lus10008433.BGIv1.0 annot-version=v1.0 MRNRILLMHVKLGLKDDARCLFDEMPEKNLVSWTTIIGGLLDKGQHLEGFKLFLIMWEELSECDPRLFSTIIRGCAGLGSVSVGKQLHACTAKMGMSANI FVSCSLIDMYSKCGSIEEARFAFEDMPDKTTVGWNIIITGYSLHGYSEEALDMFFRMRESGVKIDHFTISLIVRISTRLASLDYAKQAHAALLRHGYASD MIANASFVDFYSKWGRIEYAQNVFEQMPRKDVESWNALISGYSNRGKGAKALALFHRMLEEKVRPSHITFLAVLSACCYSNLSDEGWEIFTEMEENFGIK PRAMHFAIMIELLSRKGLVDEAFALVRDAPFEPTENMWAALLTACRVHKNLELGRYAAEKLYGMEPEKVHNYLVLLNIHKSSGNSKEAAAVLHTLRRKCM EIRPACSWIKIRRQTHEFKFGEKCHPWSKEVHEKVDELRKQISNYGYVHGEEMVMPDVDDKDQRKSSVLHSGMLAVAFGLMNTPWWVQLQVVQSHRTCRD CHEAIKLIGMMNKREIVVRDGGRFHHFKDGHCSCGDYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50390		EMB3141	EMBRYO DEFECTIVE 3141, Pentatr...		Lus10008433 [exp]	0	1
AT3G02350		GAUT9	galacturonosyltransferase 9 (....		Lus10003045 [exp]	5.8	0.8239
AT5G64020		TBL14	TRICHOME BIREFRINGENCE-LIKE 14...		Lus10038577 [exp]	20.9	0.7842
AT4G19900			alpha 1,4-glycosyltransferase ...		Lus10018315 [exp]	21.3	0.7901
AT5G06700		TBR	TRICHOME BIREFRINGENCE, Plant ...		Lus10021066 [exp]	22.1	0.7796
AT2G31440			unknown protein		Lus10025574 [exp]	23.7	0.7760
AT5G04270			DHHC-type zinc finger family p...		Lus10038701 [exp]	28.2	0.7528
AT3G15470			Transducin/WD40 repeat-like su...		Lus10027670 [exp]	29.7	0.7379
AT5G64020		TBL14	TRICHOME BIREFRINGENCE-LIKE 14...		Lus10037877 [exp]	30.3	0.7692
AT2G42320			nucleolar protein gar2-related...		Lus10040502 [exp]	30.6	0.7609
AT3G10980		SAG20, WI12, AT...	PLAC8 family protein (.1)		Lus10010219 [exp]	30.9	0.6990

Compare expression of checked genes

Lus10008433 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.