Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04885 753 / 0 Glycosyl hydrolase family protein (.1) AT5G20950 737 / 0 Glycosyl hydrolase family protein (.1.2) AT5G20940 715 / 0 Glycosyl hydrolase family protein (.1) AT3G47000 639 / 0 Glycosyl hydrolase family protein (.1) AT3G47010 630 / 0 Glycosyl hydrolase family protein (.1.2) AT3G47040 611 / 0 Glycosyl hydrolase family protein (.1.2) AT3G47050 604 / 0 Glycosyl hydrolase family protein (.1.2) AT3G62710 593 / 0 Glycosyl hydrolase family protein (.1) AT3G19620 121 / 3e-28 Glycosyl hydrolase family protein (.1) AT5G49360 119 / 1e-27 ATBXL1, BXL1 beta-xylosidase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013388 [exp] 1147 / 0 AT5G04885 801 / 0.0 Glycosyl hydrolase family protein (.1) Lus10013646 [exp] 792 / 0 AT5G20950 941 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10010657 [exp] 772 / 0 AT5G20950 889 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10001151 [exp] 771 / 0 AT5G20950 911 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10033393 [exp] 770 / 0 AT5G04885 964 / 0.0 Glycosyl hydrolase family protein (.1) Lus10005706 [exp] 769 / 0 AT5G04885 863 / 0.0 Glycosyl hydrolase family protein (.1) Lus10013390 [exp] 759 / 0 AT5G20950 935 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10008432 [exp] 753 / 0 AT5G20950 927 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10010656 [exp] 724 / 0 AT5G20950 897 / 0.0 Glycosyl hydrolase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G013500 [exp] 808 / 0 AT5G04885 966 / 0.0 Glycosyl hydrolase family protein (.1) Potri.013G055600 [exp] 801 / 0 AT5G20950 932 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.019G037400 [exp] 801 / 0 AT5G20950 926 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.008G013700 [exp] 784 / 0 AT5G20950 901 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.009G153900 [exp] 774 / 0 AT5G20950 937 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.009G042800 [exp] 649 / 0 AT3G47000 934 / 0.0 Glycosyl hydrolase family protein (.1) Potri.005G059200 [exp] 355 / 9e-118 AT5G04885 385 / 8e-131 Glycosyl hydrolase family protein (.1) Potri.009G154032 [exp] 267 / 6e-85 AT5G20940 254 / 7e-82 Glycosyl hydrolase family protein (.1) Potri.009G154701 [exp] 257 / 2e-81 AT5G04885 286 / 6e-94 Glycosyl hydrolase family protein (.1) Potri.009G154802 [exp] 213 / 5e-64 AT5G04885 232 / 5e-72 Glycosyl hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00933 [flax] [poplar] Glyco_hydro_3 Glycosyl hydrolase family 3 N terminal domain CL0058 [flax] [poplar] PF01915 [flax] [poplar] Glyco_hydro_3_C Glycosyl hydrolase family 3 C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10008434 pacid=23163493 polypeptide=Lus10008434 locus=Lus10008434.g ID=Lus10008434.BGIv1.0 annot-version=v1.0 ATGGCGGGGGCAGAGAGTGATCAGTATAAAAAGTACAAAGATCCGACAAAACCCATGAACCTTCGGATACGGAACCTAATGAGGCAGATGACGCTGACTG AAAAGATCGGGCAGATGGTTCAAATAGAGAGGACCGTGGCAAGTCCTGATCTGATAAGGAATTACTCGATCGGAAGCGTGATGAGCGACAGTGGGAGTGT GCCTTCTCCGACTGCCACTCCACATGAGTGGATTACGATGATCAATGGGTTTCAGACCGGTGCAATTTCAAGCCGGCTTGGGATTCCTTTGATGTATGGT GTTAATGCTGTTCATGGCCATAATAGTGCTTACAAAGCTACCGTTTTTCCTCACAATGTTGGGCTTGGTGCCACGAGGGACCCGGGACTAGTGAGGAGGA TTGGTGCAGCCACTGCACTAGAAGTCAGAGCGACCGGCATCAACTATGTGTTTGCTCCTTGCATTGCGGTTTGTAGAGATCCCAGATGGGGAAGGTGCTA CGAATCGTACAGCGAAGACCCTAACATCGTCAAACAAATGACGGAGATCATCCCGGGTCTGCAAGGCGACATCCCTCCGCACTGGAAATCCGGCTCTCCA TATGTTTCTGGAAGGGACAAAGTTGCAGCTTGTGCTAAGCACTATGTAGGGGATGGAGGGACTGAGAACGGTGGGAATAGAGGTGACGCAGTTGGTAGCT TCCACAGCTTGTTGAGTATTCATATGCCTGCATATTTGCCTTCCGTTATCAAAGGTGTTTCCACCATTATGACCTCTTATTCAACCTGGAATGGGGAAAA GATCCACAACCATAAGTTCCTCGTCACTGAATTCCTCAAGAGCACCCTCCGTTTCCGAGGATTTGTGATTTCAGACTGGAAAGGAGTGGAGAGGACAGAA AACTACACTGATTCAGTTCATGCAGCAATTTCAGCTGGAATTGACATGGTCATGGATCCTGACGACCATACCCAATTCATCAAAGTCCTGACAGAGCTTG TCAACCAAAAGTCCATCCCCATGGCCCGTATCGACGATGCTGTAGCGCGAATTCTGCGAGTCAAGTTCGCCATGGGCCTGTTCGAGAACCCTTGGGCTGA CGAGACCTACATCGATCATCTCGGTAGCCAGGCACACAGAGATTTGGCGAGAGAAGCCGTAAGAAAGTCATTAGTATTGCTCAAGAACGGAGACAACAAG ACAGGACCAATGTTGCCATTACCAAAACATTCTCACAGGATTCTAATAGCCGGAACCCACGCCAACAACCTCGGATTTCAATGTGGCGGCTGGACAACGT CTCACCAGGGCGAAAACGGCAACAACTACACCACCGGAACCACCATCCTGAGCGGCATCACCTCCACCGTCGACCCAACCACGGAGATCTTCTTCCACAC GAACCCACCCGCCGATTTCATCGAAGCCAACAACTTCTCCTACTCGATAGTAGTCGTGGGAGAGATACCTTACGCGGAGTCTCAGGGCGACAACGGAAAC CTGACGATACCTGAGGCGGGCCTGAACGCTATCAACAACGTGTGCGAGTGGACCAAATGCGTCGTCGTATTGGTTTCTGGCCGGCCGCTTGTGATCCAGC CTTACTTGTCTAAGATCACTGCATTGGTGGCTGCATGGCTTCCTGGTACTGAAGGCCAAGGGATTGCTGACGTATTGTACGGAGACTACGGGTTTACCGG GAAGCTACCTCGTACTTGGTTCAAGTCTGTGAGTCAGCTGCCGATGAATGTCGGAGACAAAAACTACGACCCGCTTTTCCCGTTCGGGTTTGGGATTGGT ACCAAGCCTGTAGTAATCCACGACGACTGTCTTGATAATTGCGGAAACATCACCGTTCCTTACCCCTTTGGAATCGGCGATGACCCGAAATGCGCAATCT CCTCCTCCTTCCTCTTCAAATGCAAATCCTCCGACAGCGAACAACCTCGATTGGTATTCGGCATAAACATCACTGTGCACAGCATCTTCGTCGATGAAGG CACCTTCTCTGGCTCCATGCGTGCCGCCTCCAGCTGCTACGACGAGACTGGTCGGATAGGCGTTTACAATGACCGGAACATCTCGCTAGGTTTCGGTCCA TTCCGGTTCTCCAACGTACACAATGTTGGAAATATGCACCATGGACTTGACTTTGGTGTGATACCAAAGTTAAGACGGATATGTGAGTTGACGGGAAACC TCACTTTAGCTCAGGAGCTAGCTGAAACTAGCTAG
AA sequence Show only first row Show all	>Lus10008434 pacid=23163493 polypeptide=Lus10008434 locus=Lus10008434.g ID=Lus10008434.BGIv1.0 annot-version=v1.0 MAGAESDQYKKYKDPTKPMNLRIRNLMRQMTLTEKIGQMVQIERTVASPDLIRNYSIGSVMSDSGSVPSPTATPHEWITMINGFQTGAISSRLGIPLMYG VNAVHGHNSAYKATVFPHNVGLGATRDPGLVRRIGAATALEVRATGINYVFAPCIAVCRDPRWGRCYESYSEDPNIVKQMTEIIPGLQGDIPPHWKSGSP YVSGRDKVAACAKHYVGDGGTENGGNRGDAVGSFHSLLSIHMPAYLPSVIKGVSTIMTSYSTWNGEKIHNHKFLVTEFLKSTLRFRGFVISDWKGVERTE NYTDSVHAAISAGIDMVMDPDDHTQFIKVLTELVNQKSIPMARIDDAVARILRVKFAMGLFENPWADETYIDHLGSQAHRDLAREAVRKSLVLLKNGDNK TGPMLPLPKHSHRILIAGTHANNLGFQCGGWTTSHQGENGNNYTTGTTILSGITSTVDPTTEIFFHTNPPADFIEANNFSYSIVVVGEIPYAESQGDNGN LTIPEAGLNAINNVCEWTKCVVVLVSGRPLVIQPYLSKITALVAAWLPGTEGQGIADVLYGDYGFTGKLPRTWFKSVSQLPMNVGDKNYDPLFPFGFGIG TKPVVIHDDCLDNCGNITVPYPFGIGDDPKCAISSSFLFKCKSSDSEQPRLVFGINITVHSIFVDEGTFSGSMRAASSCYDETGRIGVYNDRNISLGFGP FRFSNVHNVGNMHHGLDFGVIPKLRRICELTGNLTLAQELAETS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04885			Glycosyl hydrolase family prot...		Lus10008434 [exp]	0	1
					Lus10017627 [exp]	4.4	0.8218
AT2G24100		ASG1	ALTERED SEED GERMINATION 1, un...		Lus10029847 [exp]	6.8	0.7508
AT5G05340			Peroxidase superfamily protein...		Lus10025256 [exp]	6.9	0.7279
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Lus10013794 [exp]	8.9	0.7035
AT3G48950			Pectin lyase-like superfamily ...		Lus10027516 [exp]	11.5	0.7171
AT2G13570	CCAAT	NF-YB7	"nuclear factor Y, subunit B7"...		Lus10020899 [exp]	12.1	0.7070
AT2G25344		LCR14	low-molecular-weight cysteine-...		Lus10014355 [exp]	14.7	0.6926
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Lus10009726 [exp]	19.0	0.6888
AT1G02335		GL22	germin-like protein subfamily ...		Lus10004856 [exp]	25.7	0.6738
AT2G23755			unknown protein		Lus10000575 [exp]	26.4	0.6588

Compare expression of checked genes

Lus10008434 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.