Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37290 183 / 1e-55 ARM repeat superfamily protein (.1.2) AT1G69730 90 / 8e-19 Wall-associated kinase family protein (.1) AT1G21270 89 / 1e-18 WAK2 wall-associated kinase 2 (.1) AT1G16260 87 / 8e-18 Wall-associated kinase family protein (.1.2) AT1G21240 84 / 6e-17 WAK3 wall associated kinase 3 (.1) AT1G21250 84 / 9e-17 PRO25, WAK1 cell wall-associated kinase (.1) AT1G19390 83 / 1e-16 Wall-associated kinase family protein (.1) AT1G16120 82 / 3e-16 WAKL1 wall associated kinase-like 1 (.1) AT1G17910 82 / 4e-16 Wall-associated kinase family protein (.1) AT1G16110 81 / 4e-16 WAKL6 wall associated kinase-like 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011950 [exp] 285 / 2e-93 ND 40 / 0.001 Lus10027047 [exp] 288 / 3e-91 AT1G17930 119 / 1e-28 Aminotransferase-like, plant mobile domain family protein (.1) Lus10013385 [exp] 269 / 5e-82 AT1G21270 437 / 2e-143 wall-associated kinase 2 (.1) Lus10013386 [exp] 233 / 8e-75 AT5G37290 286 / 2e-100 ARM repeat superfamily protein (.1.2) Lus10012639 [exp] 232 / 5e-73 ND / Lus10013383 [exp] 242 / 1e-71 AT1G21270 427 / 4e-139 wall-associated kinase 2 (.1) Lus10011962 [exp] 223 / 7e-70 ND / Lus10025371 [exp] 221 / 3e-68 ND / Lus10013384 [exp] 230 / 2e-67 AT1G21270 430 / 3e-140 wall-associated kinase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G225300 [exp] 197 / 5e-61 AT5G37290 305 / 2e-107 ARM repeat superfamily protein (.1.2) Potri.009G154600 [exp] 172 / 2e-46 AT1G21270 447 / 2e-147 wall-associated kinase 2 (.1) Potri.009G154100 [exp] 169 / 2e-45 AT1G21270 437 / 2e-143 wall-associated kinase 2 (.1) Potri.004G192100 [exp] 162 / 7e-43 AT1G21270 480 / 6e-160 wall-associated kinase 2 (.1) Potri.004G191400 [exp] 160 / 2e-42 AT1G21270 414 / 2e-134 wall-associated kinase 2 (.1) Potri.004G192900 [exp] 160 / 2e-42 AT1G21270 458 / 1e-151 wall-associated kinase 2 (.1) Potri.004G192700 [exp] 159 / 5e-42 AT1G21270 464 / 4e-154 wall-associated kinase 2 (.1) Potri.004G192400 [exp] 153 / 7e-40 AT1G21270 466 / 2e-154 wall-associated kinase 2 (.1) Potri.004G191450 [exp] 149 / 1e-38 AT1G21270 474 / 7e-158 wall-associated kinase 2 (.1) Potri.004G192000 [exp] 140 / 1e-35 AT1G21270 379 / 2e-121 wall-associated kinase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10008435 pacid=23163499 polypeptide=Lus10008435 locus=Lus10008435.g ID=Lus10008435.BGIv1.0 annot-version=v1.0 ATGAGAGGAATAGGAAAACAAGCGAGCGTTTTAGATCGGATGAAAGAGCGAGTGGTCACCGCTTCACGACGGAAAGAGGGAGAGGCAGCAAAGAAGAACA AGAAGTTGAAAATCTACGACTCCCCTGACCGGTACCCTCCTGTTACGTACCCGGCGAGGTCGTATTCGAAAGATGATGACGAGAATGAGTGTCCACCACC GGGGTTTGAGTACGATGACACACAGACTTCTCCGCACATGACTTCTCCACACATGGCTTCTCTGCACACGAGCTCTCCGCACCTCGCTTCTACGGGCTCG TCACATGCCTCTGCGAGTGTCGACGTGAGAAGAGGAAAACCTAGCCGTCTTGCGCGGGTCCGGGAAGAGCACGCCGCTAGTGGAGTGGAATGCTTCGGGG GTCACATTGCACACTACTTGTGGGAGTCAGGCGAGGGCTACAGGGATCTGAAGGTCTTCAAGTTCCTGAAGCGCCCTAAGCAGTGGGACACTAACGCATT GGGAGATTATACTTGTACTTGTCCTGTTGGAAAGCGGGGTGACGGTAAAGTTGCTTGCGAAGGATTTCGTGTTACCAACTTTGCTACAGCCACTGGTGCT GTAGTCTTGTTGTCCATGGTACTTCTTCTGATGGCCATCATCTACAAAAGGAGAACGAAAGAGAAGAACTTCTTACTAAATGGAGGAATGTTGTTACAAC ACCAGAGAGTTCAGATCTTCAAGGAGTCTGAACTATCCAAGGCAACCAATAACTACAGCGCCACTCACTTTCTCGGCGAAGGAGGCTTCGACCATGTTTA CAAGGGTATATTGTTCGACTCCTTTTCCACCATCGTCGCAATCAAGAAACCCAAGGGGTCCCTCAACAAGGCTCACACCATCAGCCATGAATTCCAGCAT GAGATCGCTGTTGGGTCGCACGTGAACCACATTAACGTTGTCAAGGTGCTCGGACTCTGTCTCAAGACCAAGCTCCCCCTCTTAGTCTATGAGTCCATCC CCAATGGTACCCTCTCCGATCACATCCACAAACAATGGCAAGAGGAACAAACAGGAAGCACCGGAACCCCAAGGCTTCAATACCTTCAGGAATTGGTAAG CCAGTTTCAGAATGCAACTCATGAAGCTCAATGTCTTGGAACTCTTCTTAGACGCCTAACAGAACCCAACGAAAAGCTTGTGGAGTTTGGGGTCGGAGGA ATCTGCAATGCCTGTGTCGATCCTTCAAATGCTGCTGTGGTCAGTGAGTGCGGTGGAGTACCTCTTGTTATCCAGTGTTTATCAAGCCCTGTAAATTATT CTCTGGCGGCTCTTTACTACTTGTGTAACTCATCTACTAAGGAGGAGATGATGAAGCCAGAGGTGATTGATGTTGTTGAGCGATATGCAGCGGCTGGTAG TGTAAGCTTCAGCAATTTGGCTCAAGCATTTCTAGATAAGCATGTATCTCAAAGCACCTAA
AA sequence Show only first row Show all	>Lus10008435 pacid=23163499 polypeptide=Lus10008435 locus=Lus10008435.g ID=Lus10008435.BGIv1.0 annot-version=v1.0 MRGIGKQASVLDRMKERVVTASRRKEGEAAKKNKKLKIYDSPDRYPPVTYPARSYSKDDDENECPPPGFEYDDTQTSPHMTSPHMASLHTSSPHLASTGS SHASASVDVRRGKPSRLARVREEHAASGVECFGGHIAHYLWESGEGYRDLKVFKFLKRPKQWDTNALGDYTCTCPVGKRGDGKVACEGFRVTNFATATGA VVLLSMVLLLMAIIYKRRTKEKNFLLNGGMLLQHQRVQIFKESELSKATNNYSATHFLGEGGFDHVYKGILFDSFSTIVAIKKPKGSLNKAHTISHEFQH EIAVGSHVNHINVVKVLGLCLKTKLPLLVYESIPNGTLSDHIHKQWQEEQTGSTGTPRLQYLQELVSQFQNATHEAQCLGTLLRRLTEPNEKLVEFGVGG ICNACVDPSNAAVVSECGGVPLVIQCLSSPVNYSLAALYYLCNSSTKEEMMKPEVIDVVERYAAAGSVSFSNLAQAFLDKHVSQST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G37290			ARM repeat superfamily protein...		Lus10008435 [exp]	0	1
AT1G16670			Protein kinase superfamily pro...		Lus10042851 [exp]	2.2	0.9461
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10010374 [exp]	4.7	0.9150
AT1G30140			unknown protein		Lus10024751 [exp]	5.5	0.9402
					Lus10022017 [exp]	6.3	0.9290
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Lus10020245 [exp]	6.9	0.9402
AT2G48020			Major facilitator superfamily ...		Lus10027973 [exp]	7.9	0.8785
AT1G15200			protein-protein interaction re...		Lus10023800 [exp]	8.7	0.9241
AT1G07270			Cell division control, Cdc6 (....		Lus10000427 [exp]	8.7	0.8743
AT5G67380		ATCKA1, CKA1	casein kinase alpha 1 (.1.2)		Lus10032849 [exp]	9.5	0.9068
AT1G28560		SRD2	SHOOT REDIFFERENTIATION DEFECT...		Lus10041957 [exp]	9.5	0.9209

Compare expression of checked genes

Lus10008435 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.