Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37270 369 / 2e-129 ATRPS5B ribosomal protein 5B (.1.2) AT3G11940 369 / 3e-129 AML1, ATRPS5A ARABIDOPSIS MINUTE-LIKE 1, ribosomal protein 5A (.1.2) AT5G20935 117 / 2e-32 unknown protein ATCG00900 57 / 1e-09 ATCG00900.1, RPS7.1 CHLOROPLAST RIBOSOMAL PROTEIN S7, Ribosomal protein S7p/S5e family protein (.1) ATCG01240 57 / 1e-09 ATCG01240.1, RPS7.2 ribosomal protein S7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013381 [exp] 435 / 3e-155 AT2G37270 370 / 1e-132 ribosomal protein 5B (.1.2) Lus10000946 [exp] 385 / 8e-136 AT2G37270 374 / 8e-134 ribosomal protein 5B (.1.2) Lus10004113 [exp] 351 / 9e-121 AT2G37270 339 / 1e-118 ribosomal protein 5B (.1.2) Lus10013382 [exp] 207 / 1e-66 AT5G20935 131 / 1e-40 unknown protein Lus10002394 [exp] 53 / 7e-08 ATCG00900 229 / 3e-77 CHLOROPLAST RIBOSOMAL PROTEIN S7, Ribosomal protein S7p/S5e family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G063200 [exp] 366 / 3e-128 AT2G37270 359 / 4e-128 ribosomal protein 5B (.1.2) Potri.006G197700 [exp] 364 / 1e-127 AT3G11940 358 / 2e-127 ARABIDOPSIS MINUTE-LIKE 1, ribosomal protein 5A (.1.2) Potri.009G155300 [exp] 117 / 4e-32 AT5G20935 130 / 3e-40 unknown protein Potri.013G138900 [exp] 56 / 3e-09 ATCG00900 310 / 2e-110 CHLOROPLAST RIBOSOMAL PROTEIN S7, Ribosomal protein S7p/S5e family protein (.1) Potri.004G140500 [exp] 49 / 2e-06 ATCG00900 249 / 2e-85 CHLOROPLAST RIBOSOMAL PROTEIN S7, Ribosomal protein S7p/S5e family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11347 [flax] [poplar] DUF3148 Protein of unknown function (DUF3148) PF00177 [flax] [poplar] Ribosomal_S7 Ribosomal protein S7p/S5e
Representative CDS sequence Show only first row Show all	>Lus10008436 pacid=23163515 polypeptide=Lus10008436 locus=Lus10008436.g ID=Lus10008436.BGIv1.0 annot-version=v1.0 ATGGCGGCTTTATCTTTCTCATCCTCCGCCACAATCTCATCGAATTGCCACCGCTGCCTGGTCTTCCAATCTCGAAACAGAACTGCAGTCGCAATTAGAT GCGGAGCAGAGGAATCGACATCGCCAGAGAATAATAAGATGGCTATTAGCAGCTCCCAGGAGCCGGCCAGGAAATCGAAGCTCCAGATCGGCTCTCCGGT GGTAGTAATCGAGTCGCCCAAGATAATAAAGACCGCCGCATCCGTGCCTTGCTTGCAGGTTAACGTCGGCCTCGTTAACCCTGGAGACGTGGGCAGAATC GTTTCGAGAAAGCCAAAGGATGTGTGGGCAGTTCGTCTGGCCATCGGGACGTATTTGATAGATGGCAACAGCCGGTTTCCTCTGAGCTCATATCTCCTCC CCTCTCCGCAGCTCTCGAGCTCTTCCACAACAACCATGGCGGTCGTGGCTCCTGCTCAAGTCGACATTCCAGCTCCCGCTGCTATTGTTCCTACTTCAGC TACGACGGAAGTCAAGCTCTTCAATCGCTGGTCGTTTGATGATATTCAGATCAATGACATTTCGTTGTCTGATTACATCGGAGTGCAAGCAGCCAAGCAC GCTACTTATGTTCCTCACACAGCCGGGAGGTACTCAGCCAAACGATTCAGGAAGGCACAATGCCCGATTATTGAGAGGTTGACCAACTCTCTCATGATGC ACGGGAGGAACAATGGTAAGAAGCTGATGGCTGTGAGGATTGTGAAGCATGCCATGGAGATCATCCATCTCTTAACCGATTCAAACCCAATCCAAATCAT TGTTGATGCTGTCATCAACAGTGGTCCAAGGGAAGATGCTACTAGAATCGGTTCAGCTGGTGTTGTGAGGCGTCAGGCTGTTGATATTTCTCCCCTGAGG CGTGTCAACTCAGCATTGTATCTCTTGACCACCGGTGCTCGTGAATCCGCTTTCCGTAACATTAAGACCATTGCTGAATGCTTGGCTGATGAGCTCATTA ACGCAGCCAAGGGCTCCTCTAACAGCTATGCTATCAAGAAGAAGGATGAGATTGAGAGAGTTGCCAAGGCCAATCGTTGA
AA sequence Show only first row Show all	>Lus10008436 pacid=23163515 polypeptide=Lus10008436 locus=Lus10008436.g ID=Lus10008436.BGIv1.0 annot-version=v1.0 MAALSFSSSATISSNCHRCLVFQSRNRTAVAIRCGAEESTSPENNKMAISSSQEPARKSKLQIGSPVVVIESPKIIKTAASVPCLQVNVGLVNPGDVGRI VSRKPKDVWAVRLAIGTYLIDGNSRFPLSSYLLPSPQLSSSSTTTMAVVAPAQVDIPAPAAIVPTSATTEVKLFNRWSFDDIQINDISLSDYIGVQAAKH ATYVPHTAGRYSAKRFRKAQCPIIERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDSNPIQIIVDAVINSGPREDATRIGSAGVVRRQAVDISPLR RVNSALYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11940		AML1, ATRPS5A	ARABIDOPSIS MINUTE-LIKE 1, rib...		Lus10008436 [exp]	0	1
AT4G16720			Ribosomal protein L23/L15e fam...		Lus10007805 [exp]	1.0	0.9840
AT3G53740			Ribosomal protein L36e family ...		Lus10024402 [exp]	1.4	0.9824
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10015841 [exp]	1.7	0.9820
AT1G09590			Translation protein SH3-like f...		Lus10030607 [exp]	2.0	0.9818
AT2G32060			Ribosomal protein L7Ae/L30e/S1...		Lus10027800 [exp]	3.5	0.9767
AT1G67430			Ribosomal protein L22p/L17e fa...		Lus10006421 [exp]	3.9	0.9784
AT2G34480			Ribosomal protein L18ae/LX fam...		Lus10023454 [exp]	5.7	0.9726
AT1G04170		EIF2 GAMMA, EIF...	eukaryotic translation initiat...		Lus10024802 [exp]	5.7	0.9675
AT5G35530			Ribosomal protein S3 family pr...		Lus10030503 [exp]	6.5	0.9739
AT3G61110		ARS27A	ribosomal protein S27 (.1)		Lus10032212 [exp]	7.7	0.9636

Compare expression of checked genes

Lus10008436 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.