Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G43590 262 / 4e-79 zinc knuckle (CCHC-type) family protein (.1) AT5G36240 97 / 2e-22 zinc knuckle (CCHC-type) family protein (.1) AT3G43490 82 / 3e-17 Zinc knuckle (CCHC-type) family protein (.1) AT2G17870 63 / 2e-10 ATCSP3 ARABIDOPSIS COLD SHOCK DOMAIN PROTEIN 3, cold shock domain protein 3 (.1) AT4G36020 61 / 6e-10 CSDP1 cold shock domain protein 1 (.1) AT5G52380 57 / 1e-08 VASCULAR-RELATED NAC-DOMAIN 6 (.1) AT3G42860 57 / 2e-08 zinc knuckle (CCHC-type) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013378 [exp] 866 / 0 AT3G43590 256 / 1e-74 zinc knuckle (CCHC-type) family protein (.1) Lus10029311 [exp] 137 / 7e-36 AT3G43590 139 / 2e-37 zinc knuckle (CCHC-type) family protein (.1) Lus10016232 [exp] 137 / 2e-35 AT3G43590 139 / 6e-37 zinc knuckle (CCHC-type) family protein (.1) Lus10041902 [exp] 65 / 2e-11 AT4G36020 159 / 2e-47 cold shock domain protein 1 (.1) Lus10027475 [exp] 62 / 4e-10 AT5G52380 261 / 1e-87 VASCULAR-RELATED NAC-DOMAIN 6 (.1) Lus10039230 [exp] 61 / 6e-10 AT5G52380 261 / 2e-87 VASCULAR-RELATED NAC-DOMAIN 6 (.1) Lus10028449 [exp] 59 / 3e-09 AT4G36020 158 / 3e-47 cold shock domain protein 1 (.1) Lus10012906 [exp] 46 / 9e-05 AT3G42860 184 / 1e-54 zinc knuckle (CCHC-type) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G193500 [exp] 337 / 3e-106 AT3G43590 299 / 3e-93 zinc knuckle (CCHC-type) family protein (.1) Potri.009G155500 [exp] 329 / 6e-104 AT3G43590 286 / 9e-89 zinc knuckle (CCHC-type) family protein (.1) Potri.016G063800 [exp] 158 / 8e-44 AT3G43590 141 / 2e-38 zinc knuckle (CCHC-type) family protein (.1) Potri.015G144600 [exp] 58 / 5e-09 AT5G52380 261 / 2e-87 VASCULAR-RELATED NAC-DOMAIN 6 (.1) Potri.012G141700 [exp] 52 / 4e-07 AT5G52380 250 / 6e-83 VASCULAR-RELATED NAC-DOMAIN 6 (.1) Potri.005G112800 [exp] 51 / 8e-07 AT2G17870 86 / 1e-19 ARABIDOPSIS COLD SHOCK DOMAIN PROTEIN 3, cold shock domain protein 3 (.1) Potri.007G057100 [exp] 51 / 8e-07 AT4G36020 127 / 3e-35 cold shock domain protein 1 (.1) Potri.005G234700 [exp] 49 / 6e-06 AT1G75560 278 / 2e-94 zinc knuckle (CCHC-type) family protein (.1), zinc knuckle (CCHC-type) family protein (.2) Potri.004G161800 [exp] 47 / 3e-05 AT1G75560 273 / 2e-92 zinc knuckle (CCHC-type) family protein (.1), zinc knuckle (CCHC-type) family protein (.2) Potri.001G318100 [exp] 45 / 9e-05 AT3G42860 211 / 8e-66 zinc knuckle (CCHC-type) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0511 [flax] [poplar] Retroviral_zf PF00098 [flax] [poplar] zf-CCHC Zinc knuckle
Representative CDS sequence Show only first row Show all	>Lus10008437 pacid=23163498 polypeptide=Lus10008437 locus=Lus10008437.g ID=Lus10008437.BGIv1.0 annot-version=v1.0 ATGGGGAGGGGAGAGAAGCAGCCGGCTAAAATCGACGACGAAGAGGAGGTGGTGGGGGCGCAGAAGGAGCCGAACGTTGTGGTGGACTTGTCCGACGACG AAGACGATCTGGAGGCTAACGAGGATCTAAGCCTTAAGATCGTCCAGAAATCAGTGCTGAAGTGCAGGGCTAAGCTGGAGAGTGATGTGAACGGCGTTGT TAATTTGTGCGACGACACGAATTCGGAGGACAATGATGGTACTGTTGCTGGCGGCACCAACGGAGGCGGTGTGGCGAAGTCTTCGTCGTCTTCCTCGCTG GAGACTGAGGTGATTGTCGAGGGTCCTGATGGAGTTACGAAGAAAAAGCGGAAGAAGAAGAAGATTAGTGAGATCGAAGGTGGAGAACAATCTGTTATTA TCATAGAGGATGAAGACAAGAATGTACAACCAATTACAGAGGGGGATAAAGCTGATGAGAAGACGGTGGAAGCCCAAGATGCTGAATTAGCTGAATCCGT GGATCCAAACTCTGTGGAGATATCAGATAACATTGTGCTGAAAAAGCTTCTTCGTGGGCCAAGGTACTTTGATCCTCCAGATAATGGCTGGCCAAGTTGC TTCAAGTGTGGGGAGGACGGTCACATGGCAGTGAACTGTACATCGTTGAGGAAGAAGAAGCCATGCTTTTTCTGCGGAAGTTTGGATCATGGCCCTAAGA AATGTGGCAAGGGGAGGGATTGCTATATTTGCAGAACTGCCGGGCATCGTGCAAAGGATTGTCCCGAGAGACTGAAGGGTATTGCTCAGACTTCCAAAAT TTGTGTGAAGTGTGGAGGTTCCGGGCATGAAATGTATACCTGCAGAAACAGTTACTCTGAGAATGATCTTAAGGAAATACAATGTTACATTTGCAAGAGG TTTGGCCATCTATGCTGCGTTAATGATGTGGATGATGGAGGATTCATGCTTTCCTGCTACCGATGTGGTGCAGTCGGTCATACTGGCATGGCATGTTCAA GGATATCCAACCAAGCAACTAGTAGTACTGCTGACATTGCAGCATCACCCAGTTCATGCTACAGATGCGGTGTAGGAGGGCATTTCGCCCGTGATTGCAC TACGCCTAGCATGGCTGGCAAGAGGAACCGTGAATTATCAACTCCCAATTTGAAACCTCACAAAGAGATCATTACAGGACAGAACTCCGCTCCCCCTGAT GTTGGTAAAGCTTCGAAAAAGAGGAAAACAAAGAAGTCGAAACAGGAAGCCGGATCGGTCACTGACGAAAAGCCTGAAACAAAGCCAAAACAAAGAGGTG GATGGCTTACTGAATATGTCGAAGACTACGATTCCGACTCAAAGCCGTTGCCGAAGAAAAAGCCGAAAAAAGGATCTGGATCCGTGGCGGAGTCTCAACC TTCACAAAATAAGTCGAAAAAGAAGAAAGCTGCTATAGAGGATCATCAGAATCCCCTGCCTCGAACGCCTCCTTCGAAAAAGAACTCAAAGTGGAAAGGC GCGAACCAGCTACCACCAACACCATCTTCGAATACACCGAAACAGAGAGGTGAATGGTTCATTAGGAATGCCGATAATCAGCCGCCGCCACCTCTAACAC CGCCTCAGTACCGGAATTGCGACATTCACACTCCACCCCCCCCCAGCCACTACCATTCACCAACTCCACAATACCAGAGGTTTCCGGATCACCCTCCACC ATATCTGTCTCATTATTCATCTCATCATCATCCAACAGCATATCACCATCATCAGCAGCAGAGATTTCATGACCACGCTCGTCCATTTCACGGTGGCGGC CAAGGGATGCGGCTGCCGTATCATCATGAGAGGTTTTCTGGACCTCAGCCGCAGTTCCAGGGTGGTCAGCAACCCACAGCTTATAATCCTGATAAGCATC CAGCTCGCAGGTTTGGCAACGCGGGCAGCGAATATGGGGATTACTCGAGGAGTTATGATGATCATACTAGGTATCGTCGTAATTATGATTGGCGGTAG
AA sequence Show only first row Show all	>Lus10008437 pacid=23163498 polypeptide=Lus10008437 locus=Lus10008437.g ID=Lus10008437.BGIv1.0 annot-version=v1.0 MGRGEKQPAKIDDEEEVVGAQKEPNVVVDLSDDEDDLEANEDLSLKIVQKSVLKCRAKLESDVNGVVNLCDDTNSEDNDGTVAGGTNGGGVAKSSSSSSL ETEVIVEGPDGVTKKKRKKKKISEIEGGEQSVIIIEDEDKNVQPITEGDKADEKTVEAQDAELAESVDPNSVEISDNIVLKKLLRGPRYFDPPDNGWPSC FKCGEDGHMAVNCTSLRKKKPCFFCGSLDHGPKKCGKGRDCYICRTAGHRAKDCPERLKGIAQTSKICVKCGGSGHEMYTCRNSYSENDLKEIQCYICKR FGHLCCVNDVDDGGFMLSCYRCGAVGHTGMACSRISNQATSSTADIAASPSSCYRCGVGGHFARDCTTPSMAGKRNRELSTPNLKPHKEIITGQNSAPPD VGKASKKRKTKKSKQEAGSVTDEKPETKPKQRGGWLTEYVEDYDSDSKPLPKKKPKKGSGSVAESQPSQNKSKKKKAAIEDHQNPLPRTPPSKKNSKWKG ANQLPPTPSSNTPKQRGEWFIRNADNQPPPPLTPPQYRNCDIHTPPPPSHYHSPTPQYQRFPDHPPPYLSHYSSHHHPTAYHHHQQQRFHDHARPFHGGG QGMRLPYHHERFSGPQPQFQGGQQPTAYNPDKHPARRFGNAGSEYGDYSRSYDDHTRYRRNYDWR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G43590			zinc knuckle (CCHC-type) famil...		Lus10008437 [exp]	0	1
AT5G01160			RING/U-box superfamily protein...		Lus10017185 [exp]	1.0	0.7972
AT2G28380		DRB2	dsRNA-binding protein 2 (.1)		Lus10000721 [exp]	3.0	0.7693
AT1G34320			Protein of unknown function (D...		Lus10006049 [exp]	4.5	0.7588
AT1G13220		CRWN2, LINC2	LITTLE NUCLEI2, CROWDED NUCLEI...		Lus10034263 [exp]	5.8	0.7830
AT4G38150			Pentatricopeptide repeat (PPR)...		Lus10013853 [exp]	6.3	0.6932
AT5G13570		TDT, DCP2, ATDC...	TRIDENT, decapping 2 (.1.2)		Lus10023516 [exp]	14.4	0.7618
AT3G18035		HON4	winged-helix DNA-binding trans...		Lus10024594 [exp]	17.7	0.7472
AT1G67340			HCP-like superfamily protein w...		Lus10037021 [exp]	20.3	0.7398
AT4G19190			zinc knuckle (CCHC-type) famil...		Lus10037279 [exp]	20.9	0.6885
AT4G03630			RNI-like superfamily protein (...		Lus10008704 [exp]	22.7	0.6595

Compare expression of checked genes

Lus10008437 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.