Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44050 1171 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G19050 639 / 0 POK2 phragmoplast orienting kinesin 2 (.1) AT3G17360 614 / 0 POK1 phragmoplast orienting kinesin 1 (.1) AT4G14150 377 / 6e-110 KINESIN-12A, PAKRP1 phragmoplast-associated kinesin-related protein 1 (.1) AT3G23670 369 / 2e-109 PAKRP1L ,KINESIN-12B phragmoplast-associated kinesin-related protein, putative (.1.2) AT5G47820 255 / 1e-69 FRA1 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G20150 252 / 1e-68 Kinesin motor family protein (.1) AT3G50240 251 / 3e-68 KICP-02 ATP binding microtubule motor family protein (.1) AT5G60930 246 / 6e-66 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G63480 231 / 1e-65 ATP binding microtubule motor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013377 [exp] 2412 / 0 AT3G44050 1290 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10027934 [exp] 664 / 0 AT3G19050 1521 / 0.0 phragmoplast orienting kinesin 2 (.1) Lus10012048 [exp] 657 / 0 AT3G19050 1758 / 0.0 phragmoplast orienting kinesin 2 (.1) Lus10018341 [exp] 620 / 0 AT3G19050 1074 / 0.0 phragmoplast orienting kinesin 2 (.1) Lus10017113 [exp] 619 / 0 AT3G17360 1085 / 0.0 phragmoplast orienting kinesin 1 (.1) Lus10021969 [exp] 357 / 9e-104 AT3G23670 689 / 0.0 phragmoplast-associated kinesin-related protein, putative (.1.2) Lus10016589 [exp] 293 / 1e-81 AT3G20150 914 / 0.0 Kinesin motor family protein (.1) Lus10041262 [exp] 268 / 6e-74 AT3G23670 559 / 8e-180 phragmoplast-associated kinesin-related protein, putative (.1.2) Lus10018120 [exp] 251 / 3e-68 AT3G45850 1583 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G156000 [exp] 1462 / 0 AT3G44050 1231 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G145800 [exp] 692 / 0 AT3G19050 1765 / 0.0 phragmoplast orienting kinesin 2 (.1) Potri.014G149000 [exp] 379 / 2e-110 AT3G23670 1426 / 0.0 phragmoplast-associated kinesin-related protein, putative (.1.2) Potri.002G235500 [exp] 379 / 2e-110 AT3G23670 1399 / 0.0 phragmoplast-associated kinesin-related protein, putative (.1.2) Potri.001G360200 [exp] 298 / 4e-83 AT3G20150 804 / 0.0 Kinesin motor family protein (.1) Potri.002G106000 [exp] 254 / 1e-68 AT5G60930 1524 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G123500 [exp] 246 / 8e-67 AT5G47820 1639 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.005G150800 [exp] 246 / 4e-66 AT5G60930 1386 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G024700 [exp] 241 / 4e-65 AT5G47820 1580 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.007G046700 [exp] 240 / 8e-65 AT5G47820 1422 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Lus10008438 pacid=23163477 polypeptide=Lus10008438 locus=Lus10008438.g ID=Lus10008438.BGIv1.0 annot-version=v1.0 ATGCCGTTCAACTACGAAGCGGCTGCAAGCGCTATCAAGAGCCGGTTTGGCTTCCACGACCGCTCCACCTCGGAGACCGTGCCGAATACTCCATTTCTGC TGAACTCGGTTTCTCGAGACGAGTTTACTTCCGGCAAGCCTTTGGTTGCCTCTTCAGCAGCTCGGAGGATCGTCGACTGGGAGGATGATTCTGGTAACGA TAACAACGGATCGGAGATGCAGAGCTCGGAGCTCATCGACGATTCATCCTTTTGGAAGGAGAACAATGTACAGGTTATCATAAGAATGCGTCCATTGAGT GGTTCAGAAATTTCTCAACAAGGACAGAAAAAGTGCGTCAGGAGAGACAATCCTCAGATGATAACTTGGACTGGACCTCCAGAGTCCCGCTTTACTTTTG ATCTAGTTGCAGATGAGAATGTCGGCCAGGAGCAAATGTTCAAGGCAGCTGGGATGCCAATGGTGGATAATTGCATGGGAGGGTACAATAGCTGTATGTT TGCATATGGTCAGACAGGAAGTGGGAAGACCTACACTATGCTGGGAGACATTGAGGGAGGTACAAGAAGGCACAGTGTTCATTGTGGGATGACACCTAGA GTCTTCGAATACTTGTTCTCTAGAATACAAAAGGAAAAAGATGTCCGAAACGAGGAAAAGCTGAAGTTTATTTGCAAATGCTCTTTCTTGGAGATATATA ATGAACAGATTCTTGATCTGTTGGACCCATCATCAAACAATTTACAGATAAGAGAAGATGTGAAGAAAGGAGTTTACGTGGAGAATTTGAAAGAGGTAGA AGTCAGCAGTGCTCGAGATGTTATTCAACAGCTTATTGAGGGTTCAACAAACAGAAAAGTGGCTGCTACTAATATGAACCATGCAAGTAGTCGTTCTCAT AGTGTATTCACATGCATTATTGAAAGTAAGTGGGAATCACAAGGTGTCACTCACCACCGGTTTGCCCGACTTAACCTAGTTGATTTAGCTGGATCCGAAA GGCAGAAAAGTTCTGGTGCTGAAGGAGAACGCCTCAAGGAAGCTACAAATATCAACAAGTCCCTATCCACCTTGGGCCTTGTGATTATGAATCTTGTTAG CATATCCAATGGAAAAGCCCTCCATGTTCCTTACAGAGACTCAAAGCTGACATTTTTGCTTCAGGATTCTCTTGGAGGCAATTCAAAGACTATCATTGTT GCAAATATTAGTCCGGCTCTCTGCAATTCCTTGGAAACATTGGGCACATTGAAGTTTGCGCAACGTGCAAAGTTCATCAAGAACAACGCGATCGTCAATG AAGATACATCAGGAGATGTGATTGGCATGCGGATGCAAATTCAGCAATTGAAGAAAGAAGTTTCCCACCTGCGTAGTATAGTAAATAATGGAGCAGGCAG TTTGAGCAGCATGGATGCTTCAGCAGTAAGCATTTCTGGATCGCCAACTGCCTTTAAGTGGGATGGTATTCAAGGATCATTCAGTCCTTTTGTTTCTGAA AAAAGGGCGTCTCAGAAGAAAGACTATGATGCTGCCCTTGTTGGAGCTTTCAAGAGGGAACAAGATAAGGATTTGGCATTGAAGGCATTGACAGCTGAAA ATCAGGCAATTATGAAACTGGCTAAGCAAAGAGAAGATGAGATACAGGGCCTCAAAATGAGGCTGCGTTTCCGTGAAGCCGGAATCAAGAGGTTAGAGTT GGTTGCTTCTGGGAAAATTTCAGCGGAGACACACTTGTTGCAGGAAAAAGAGGAATATTTGAAGGAAATCCAAGTTCTGCGAACCCAAGTTGACAGAAAC CAAGAAGTTACACGATTCGCTATGGAGAATTTGAAGCTAAAGGAAGAAATTAGAAGGCATGTCTTATTGAAATCAAGTAGCGAGGAGGGTGACAGGGAAA TTTTGACCGAACAGATCACAGTCTTGCAAAACAAGTTGCTGGAAGCTCTTGATTGGAAACTTATGCATGAATCAGACACATTGTTTGCTCAGAAAGAAAA TTCAAATAAGGGGAAGGATGAAGATAGCGATCTCTTCAAGTTATGCGAGGAATCAGGATCACCTCGGCACTTGTTACTGCAGGAAGAGAAAGAGTTCCTT CGTATGCAAGCGATTCAAAACAAGTCAGAAATAGACACACTCCATGAGCAGTTGAACTTCTGTCTTGAAGAAAGAGAGAGACTTCAAAGGGATGTCAATG ATCTGGCTGAAAAACTTGAAGAAGCGAGAAGAGACGTAATGGCGAGAAGAGATGTAATGGAAGCCAAAAACAACACTGAGGGGTCAGTTGGTGGTACTAA TGATCAAATAGAGCTTAAGACCATGGTTGATGCAATTGCTGCTGCAACTCAAAGAGAAGCAGAACTGTCAATGGAGAACAGTAAGGTCCGGGTAATGCTT GAAACCCAGATCCAGGAGAATGAGCAACTGCAGTCGAAGTTAAAAGCCTTGATCGAGGAGAAAAACAGTCTCATTGAGATGTATGAACGTGCTGCTTCAG AAAGTAAATACAAAGGCTTGGACAGCTCCGAGACTGCCAGAGAATCTGACATGGATGTAGACAACTCTGACTTTGTCAGGTCAAACGAGGCCGAATCAAA AACAGCTCTCGAATACTTGGAGCACCAGCTTATGGAGATGCATGAAGAAAATGACCGGTTGCTGGGACTTTATGAAACCGCCATGCATGAGAGGGATGAA TTTAAAAGGATACTTTCTTGCTCTGAACAGCAAGCTGACAACAGCAAAGCTGGACATGATTGCCAAGAGAGATTTGTTGAAGTTGACATAGGGGAGTTTC CGGAATCTGATAATTCCCTAACTCATTCAAATGCAGAACACTTGCAGAATTCTGAACCAGACGTACCGAAATCGGAAAAGCAGACATCTAATGGCTTCAG CCTCGACGGAGAAGATCTGATGCAACTTGGACTCGAGTCTGATGCAGAGAACAATATGGATGAAGTTGTTGGTTTGAAGATACGGGATCTAGATTCAGTG AAGAACAAGCTGGAAAAAGCTCAGGAGAAGCTTTCAGGTTCTGCCAAAATCCTGACAATGTTTACTTCCCTGGAGAAGGCTTTCAGCCAATTCGACAAAG TATCAAGGGAAGTCGAAAAAATGGAAAAACAACTTCATGCCAAGCAAACAGAAATGAAATCATTCGAACGTCTATCTGCAGAGCTACAAGATAGAAAATC CGTCACAGACAAGAAATTCTCCGCTCTGAGATGTTCTCTCTCGAGCTTTTCTTCCTCTCTCGCGTACTTTGATCAGCGAGAAGCTCGAGCAACTGCAAAG ATGAACGCTTCATCGTCACAACTAGCTAGAAAGGAAGAGGAATTCACCCGGATGAATTCTCAAAAGACAGAACTGGAGGCTGGAGTTGTAAAGGCGAAAC AATCCGAAGCTGAACTGAGAAGCAGCATCTCGGTTTTGAGAAGCAAACTGGAAGAAGAGAATCGACTACAGGAGAACGAGAAGGTCCTCTTCGCCATAGA CAGCAACATCGAGAAATGGCAGTTAGGTAAAGCCACCGAGCTGTTAAAGTCCGAGGAAGAGAAAACGAAGCTACAAACCGAGCTGAAGTCCTTAGAGCGG TTTATTACCACCACGAGAAAGGAAATCGAGAACCTGAGCAGGAAACTGAGGAAGATCGAGACCGAAATGGAGACTCTCAAGATGGAAATAGTGACCAGCA GGACAACCACGGAGGAGATGAAGCATGGTTACGATCCCGTAGCGAAGGAGAAGGAATCTCTACTTGAGATCATTGAGAGTGGGAAGTCAGAACTCGAGTC GATGGTCGTCGAGTATCAGCAGCAAATCTTTGCGGCGGATTTGGCTGATGCGGAGAGGGAGATTGTGGAGGGTGATGCTTTGGTTGAGCTGGGGAGAGCA GAAGAGTTGAGGGGTAAGAAATTAGCTGTTGCTGAAGAAGTTGCGAAGTTGTTGGGAGAGACGAGTTTGTGCTTTGTGTCGAAGAAGATTGAAGAAGAGC TTAGGGGGGTTGAAGCTGAGGTAATGGAGGCTAAGAGTTTGCTGAATGGTGAAAACTCGTGTCAGGTTTAG
AA sequence Show only first row Show all	>Lus10008438 pacid=23163477 polypeptide=Lus10008438 locus=Lus10008438.g ID=Lus10008438.BGIv1.0 annot-version=v1.0 MPFNYEAAASAIKSRFGFHDRSTSETVPNTPFLLNSVSRDEFTSGKPLVASSAARRIVDWEDDSGNDNNGSEMQSSELIDDSSFWKENNVQVIIRMRPLS GSEISQQGQKKCVRRDNPQMITWTGPPESRFTFDLVADENVGQEQMFKAAGMPMVDNCMGGYNSCMFAYGQTGSGKTYTMLGDIEGGTRRHSVHCGMTPR VFEYLFSRIQKEKDVRNEEKLKFICKCSFLEIYNEQILDLLDPSSNNLQIREDVKKGVYVENLKEVEVSSARDVIQQLIEGSTNRKVAATNMNHASSRSH SVFTCIIESKWESQGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATNINKSLSTLGLVIMNLVSISNGKALHVPYRDSKLTFLLQDSLGGNSKTIIV ANISPALCNSLETLGTLKFAQRAKFIKNNAIVNEDTSGDVIGMRMQIQQLKKEVSHLRSIVNNGAGSLSSMDASAVSISGSPTAFKWDGIQGSFSPFVSE KRASQKKDYDAALVGAFKREQDKDLALKALTAENQAIMKLAKQREDEIQGLKMRLRFREAGIKRLELVASGKISAETHLLQEKEEYLKEIQVLRTQVDRN QEVTRFAMENLKLKEEIRRHVLLKSSSEEGDREILTEQITVLQNKLLEALDWKLMHESDTLFAQKENSNKGKDEDSDLFKLCEESGSPRHLLLQEEKEFL RMQAIQNKSEIDTLHEQLNFCLEERERLQRDVNDLAEKLEEARRDVMARRDVMEAKNNTEGSVGGTNDQIELKTMVDAIAAATQREAELSMENSKVRVML ETQIQENEQLQSKLKALIEEKNSLIEMYERAASESKYKGLDSSETARESDMDVDNSDFVRSNEAESKTALEYLEHQLMEMHEENDRLLGLYETAMHERDE FKRILSCSEQQADNSKAGHDCQERFVEVDIGEFPESDNSLTHSNAEHLQNSEPDVPKSEKQTSNGFSLDGEDLMQLGLESDAENNMDEVVGLKIRDLDSV KNKLEKAQEKLSGSAKILTMFTSLEKAFSQFDKVSREVEKMEKQLHAKQTEMKSFERLSAELQDRKSVTDKKFSALRCSLSSFSSSLAYFDQREARATAK MNASSSQLARKEEEFTRMNSQKTELEAGVVKAKQSEAELRSSISVLRSKLEEENRLQENEKVLFAIDSNIEKWQLGKATELLKSEEEKTKLQTELKSLER FITTTRKEIENLSRKLRKIETEMETLKMEIVTSRTTTEEMKHGYDPVAKEKESLLEIIESGKSELESMVVEYQQQIFAADLADAEREIVEGDALVELGRA EELRGKKLAVAEEVAKLLGETSLCFVSKKIEEELRGVEAEVMEAKSLLNGENSCQV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G44050			P-loop containing nucleoside t...		Lus10008438 [exp]	0	1
AT3G06030		AtANP3, MAPKKK1...	NPK1-related protein kinase 3 ...		Lus10034060 [exp]	1.0	0.9779
AT5G17160			unknown protein		Lus10038036 [exp]	2.4	0.9742
AT2G36200			P-loop containing nucleoside t...		Lus10014216 [exp]	3.0	0.9739
AT4G32830		ATAUR1	ataurora1 (.1)		Lus10005487 [exp]	3.5	0.9721
AT1G49870			unknown protein		Lus10002116 [exp]	3.9	0.9721
AT3G03130			unknown protein		Lus10009977 [exp]	4.0	0.9722
AT2G23380		SET1, SDG1, ICU...	SETDOMAIN 1, SETDOMAIN GROUP 1...		Lus10019336 [exp]	4.9	0.9440
AT1G72250			Di-glucose binding protein wit...		Lus10013714 [exp]	5.3	0.9714
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10006851 [exp]	5.7	0.9704
AT2G33560		BUBR1	BUB1-related (BUB1: budding un...		Lus10030714 [exp]	6.3	0.9661

Compare expression of checked genes

Lus10008438 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.