Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06570 281 / 8e-94 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G45610 173 / 2e-51 alpha/beta-Hydrolases superfamily protein (.1) AT5G62180 172 / 3e-51 ATCXE20 carboxyesterase 20 (.1) AT5G27320 172 / 4e-51 ATGID1C, GID1C GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) AT2G45600 163 / 1e-47 alpha/beta-Hydrolases superfamily protein (.1) AT3G05120 163 / 2e-47 ATGID1A, GID1A GA INSENSITIVE DWARF1A, alpha/beta-Hydrolases superfamily protein (.1) AT5G23530 162 / 2e-47 ATCXE18 carboxyesterase 18 (.1) AT5G16080 160 / 2e-46 ATCXE17 carboxyesterase 17 (.1) AT1G68620 157 / 2e-45 alpha/beta-Hydrolases superfamily protein (.1) AT3G63010 156 / 7e-45 ATGID1B, GID1B GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013377 [exp] 495 / 6e-163 AT3G44050 1290 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10013376 [exp] 431 / 8e-153 AT5G06570 256 / 3e-84 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10036168 [exp] 405 / 2e-142 AT5G06570 321 / 2e-109 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10015989 [exp] 325 / 8e-111 AT5G06570 337 / 1e-115 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10015988 [exp] 303 / 5e-102 AT5G06570 346 / 5e-119 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10016204 [exp] 234 / 1e-75 AT5G06570 260 / 7e-86 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10029341 [exp] 228 / 9e-73 AT5G06570 293 / 5e-98 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10024087 [exp] 204 / 3e-63 AT5G16080 187 / 1e-56 carboxyesterase 17 (.1) Lus10041632 [exp] 180 / 3e-54 AT5G16080 182 / 1e-54 carboxyesterase 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G155800 [exp] 387 / 3e-135 AT5G06570 310 / 4e-105 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.006G198800 [exp] 334 / 2e-114 AT5G06570 373 / 1e-129 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.016G065000 [exp] 328 / 6e-112 AT5G06570 376 / 7e-131 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.003G192600 [exp] 201 / 2e-62 AT1G68620 173 / 2e-51 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G127600 [exp] 201 / 4e-62 AT5G16080 346 / 2e-118 carboxyesterase 17 (.1) Potri.003G192650 [exp] 201 / 5e-62 AT5G16080 182 / 1e-54 carboxyesterase 17 (.1) Potri.001G032400 [exp] 200 / 9e-62 AT1G68620 185 / 9e-56 alpha/beta-Hydrolases superfamily protein (.1) Potri.016G031500 [exp] 198 / 4e-61 AT1G68620 159 / 5e-46 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G101400 [exp] 194 / 1e-59 AT5G16080 357 / 6e-123 carboxyesterase 17 (.1) Potri.017G113700 [exp] 188 / 4e-57 AT5G16080 358 / 3e-123 carboxyesterase 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF07859 [flax] [poplar] Abhydrolase_3 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10008439 pacid=23163508 polypeptide=Lus10008439 locus=Lus10008439.g ID=Lus10008439.BGIv1.0 annot-version=v1.0 ATGTCGGAAGAAACTCCTCCGACCACCGTTGACTACGAAGACTGTCTGGGCCTCCTCAGAGTTTACAAAGACGGCTCAACCCGGAGAACCTCTAACCCAA TCTTCAACGTCCCGGTCAACCCCACCCCTTCCGTCACATTCCAAGACGCAACCTTTGACCACCAAAACAACCTCCAACTCCGCCTCTACAAACCCACCCA ATCATCCACCGCCCAAACAAAGCTTCCGATCGTAATCCACATCCACGGCGGCGGATTCTGCGTCGGCTCCAACATCTCACCCGCCTCCCAAAACTCCTGC TTCCGCCTCGCCTCCCAGCTCGAGTCGATCGTGATCTCCCCGGCTTACCGGCTGGCCCCGGAGAGCCGGCTTCCGGCAGCGATCGACGACGGATACGCGG CGCTGAAGTGGCTCCGGGACCAGGCGGCGGCTGAGCCGTGGCTAAGTTACCTGGCGGATTTTGGGAAGGTGTTTGTTTTGGGGGAATCAGCAGGTGGGAA TATTGCTCATAATCTGGCGGTTCGGGTTGGAACCGGGTCGGGTGAGTTGGGTCCGGTCGAGGTGAAAGGGTATGTGTTGTTGTATCCGTTTTTTGGTGGG GTTGAGAGGACCAAGTCTGAAGCTGAGGCTCCTGAAGATTCCTTGCTGAATCTTGATCTTGTCGACTGGTTCTTGAGGCACTCAGTCCCCGTCGGCGAGA CATCCGATTATCCAACGGTGAACCCATTTGGACCGGGTAGCAAGGATCTTCAAGAGGTAGAGCTTGGTCCTATGCTAGTGATTTCTGGTGGAGATGATCT ACTGGTAGATCGTATCAGAGACTATGCTGAGAAGCTAAAGCAGATGGGGAAGAGGATTCAGTATGCTGAGTTTGAAGGACAAAGCCATGGCTTCACCACA ATGAATCCGGACTCTGAAGCTGCTAGTTCTGTGATGGATCTCATCAAGAAATTCATCATTCAGCATTCAAACTGA
AA sequence Show only first row Show all	>Lus10008439 pacid=23163508 polypeptide=Lus10008439 locus=Lus10008439.g ID=Lus10008439.BGIv1.0 annot-version=v1.0 MSEETPPTTVDYEDCLGLLRVYKDGSTRRTSNPIFNVPVNPTPSVTFQDATFDHQNNLQLRLYKPTQSSTAQTKLPIVIHIHGGGFCVGSNISPASQNSC FRLASQLESIVISPAYRLAPESRLPAAIDDGYAALKWLRDQAAAEPWLSYLADFGKVFVLGESAGGNIAHNLAVRVGTGSGELGPVEVKGYVLLYPFFGG VERTKSEAEAPEDSLLNLDLVDWFLRHSVPVGETSDYPTVNPFGPGSKDLQEVELGPMLVISGGDDLLVDRIRDYAEKLKQMGKRIQYAEFEGQSHGFTT MNPDSEAASSVMDLIKKFIIQHSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06570			alpha/beta-Hydrolases superfam...		Lus10008439 [exp]	0	1
AT1G18390			Protein kinase superfamily pro...		Lus10016737 [exp]	1.4	0.8084
AT2G24820		AtTic55, TIC55-...	translocon at the inner envelo...		Lus10026246 [exp]	2.2	0.8195
AT4G31270	Trihelix		sequence-specific DNA binding ...		Lus10026986 [exp]	6.0	0.7990
AT1G52870			Peroxisomal membrane 22 kDa (M...		Lus10032655 [exp]	8.1	0.7664
AT2G37570		SLT1	sodium- and lithium-tolerant 1...		Lus10024406 [exp]	9.2	0.7921
AT1G52870			Peroxisomal membrane 22 kDa (M...		Lus10043097 [exp]	9.5	0.7849
AT4G03260			Outer arm dynein light chain 1...		Lus10018514 [exp]	9.8	0.7766
AT4G10770		ATOPT7	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10028445 [exp]	11.4	0.7783
AT1G63420			Arabidopsis thaliana protein o...		Lus10027473 [exp]	15.5	0.7360
AT4G04955		ATALN	allantoinase (.1)		Lus10025648 [exp]	16.2	0.7366

Compare expression of checked genes

Lus10008439 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.