Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013377 [exp] 102 / 1e-25 AT3G44050 1290 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10013376 [exp] 80 / 3e-18 AT5G06570 256 / 3e-84 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10008441 [exp] 66 / 4e-14 AT5G06570 79 / 3e-18 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10008439 [exp] 55 / 3e-09 AT5G06570 281 / 8e-94 alpha/beta-Hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008440 pacid=23163512 polypeptide=Lus10008440 locus=Lus10008440.g ID=Lus10008440.BGIv1.0 annot-version=v1.0 ATGGTGTCCTTCAAACTTGATGTATCAAATCCTCTTCCCCATCCGCTTAAGCTTGGTGGCATAGTCCCTGATACGGTCTACAAGTACGTCCCTTCCACCA GCAATCACCAGCATGGGATCAAGCTCTACCGTTGCAAAGTCTTTGCTCCTAGGGCCAAACAGGTTCACCGTCGGATAATCGGGACCGACCAACTCACTCA GCCACGACTCAGCCAGCTCAGCCAGACTCTGGATCCACTTCAGAGCCGCGTAGCAATCGTCAATCGCCGCCGGGAGCCGGCTCTCCGGAGCCAGCTGGTA AGCCGGCAAGATCACTACGGCCCCGAGCTGAGGAAAATGATCGGAAGCTTCGTTGATCCGGTGGAAGTGGTATTGAAGATGAAAGCTCAAGAGAAGGAAG CAGCAGTAGCTACTCGTGAAGTTGATCATACAGGATCAGCAGCTAACGGAGTGAGGAGGCAGGACTTTGCTAACGGCGTTATGACAGAAATAGTCTGTTA A
AA sequence Show only first row Show all	>Lus10008440 pacid=23163512 polypeptide=Lus10008440 locus=Lus10008440.g ID=Lus10008440.BGIv1.0 annot-version=v1.0 MVSFKLDVSNPLPHPLKLGGIVPDTVYKYVPSTSNHQHGIKLYRCKVFAPRAKQVHRRIIGTDQLTQPRLSQLSQTLDPLQSRVAIVNRRREPALRSQLV SRQDHYGPELRKMIGSFVDPVEVVLKMKAQEKEAAVATREVDHTGSAANGVRRQDFANGVMTEIVC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10008440 [exp]	0	1
					Lus10013672 [exp]	1.0	0.9617
AT3G18040		ATMPK9	MAP kinase 9 (.1.2)		Lus10027248 [exp]	1.4	0.8940
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036126 [exp]	3.5	0.8549
AT5G62420			NAD(P)-linked oxidoreductase s...		Lus10031739 [exp]	3.5	0.8517
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10014605 [exp]	5.8	0.7914
					Lus10005608 [exp]	7.3	0.8244
					Lus10024160 [exp]	8.1	0.7922
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10026237 [exp]	10.2	0.8173
AT5G62420			NAD(P)-linked oxidoreductase s...		Lus10031162 [exp]	10.4	0.8170
AT4G20820			FAD-binding Berberine family p...		Lus10023376 [exp]	13.4	0.8463

Compare expression of checked genes

Lus10008440 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.